View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_low_1 (Length: 672)
Name: NF21353_low_1
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 48455647 - 48456211
Alignment:
| Q |
1 |
gaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcga |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48455647 |
gaggttgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcga |
48455746 |
T |
|
| Q |
101 |
ttccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagaggcgatgaaagcaaagagtgtggaatt |
200 |
Q |
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| T |
48455747 |
ttccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtgccgtggggtcagaggcaatgaaagcaaagagtgtggaatt |
48455846 |
T |
|
| Q |
201 |
gctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgagggaggtggctacagttgttgaa |
300 |
Q |
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| T |
48455847 |
gctagttgcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgagggaggtggctacagttgttgaa |
48455946 |
T |
|
| Q |
301 |
---tcttcttcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagtgatgtatctatggaagctggaggga |
397 |
Q |
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| T |
48455947 |
tcttcttcttcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagtgatgtatctatggaagatggaggga |
48456046 |
T |
|
| Q |
398 |
aaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatggtgatgttgtgcttgtggaacttttggcggctagggctaagagaattaa |
497 |
Q |
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| T |
48456047 |
aaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggtgatggtgtgcttttggaacttttggcggctagggctaagagaattaa |
48456146 |
T |
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| Q |
498 |
tactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatctatataatgttttg |
562 |
Q |
| |
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| T |
48456147 |
tactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatctatataatgttttg |
48456211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 351 - 561
Target Start/End: Original strand, 48461444 - 48461648
Alignment:
| Q |
351 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagctggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatggt |
450 |
Q |
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| T |
48461444 |
gtagaagatgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
48461543 |
T |
|
| Q |
451 |
gatgttgtgcttgtggaacttttggcggctagggctaagagaattaatactaaagttaggaactgtttgagtttgaggaagtttgccatgacaaaatcta |
550 |
Q |
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| T |
48461544 |
gatgatgtg------gaacttttggtggctagggctaagagaattaatgctaaagtgagtaaatgtttcaggttgaggatgttagccatgacaaaatcta |
48461637 |
T |
|
| Q |
551 |
tataatgtttt |
561 |
Q |
| |
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|||||||||| |
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| T |
48461638 |
aataatgtttt |
48461648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 48461110 - 48461383
Alignment:
| Q |
8 |
cttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcgattccatc |
107 |
Q |
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|||| ||||| || ||| ||||||||||||| |||| |||||| ||||| ||||||||||| ||| || |||||||||||||||| ||||| |||||||| |
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| T |
48461110 |
cttcatcggagatagcttttcgccattggaagagcatttctccgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccatc |
48461209 |
T |
|
| Q |
108 |
gaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagaggcgatgaaagcaaagagtgtggaattgctagtt |
207 |
Q |
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| T |
48461210 |
gaatccaaatgtacgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggaggcgatgaaggccaacaaggatgaattgctacct |
48461309 |
T |
|
| Q |
208 |
gcacctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgaggga |
281 |
Q |
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| T |
48461310 |
gcacctccaatggaaaagagagtagctgcaggaggggattttgttttgaaggttttggtgaaagtgttgaggga |
48461383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 592
Target Start/End: Original strand, 48456227 - 48456261
Alignment:
| Q |
558 |
ttttgcttaatgatgagatagatagttataaggaa |
592 |
Q |
| |
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| T |
48456227 |
ttttgcttaatgatgagatagatagttataaggaa |
48456261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 593 - 627
Target Start/End: Original strand, 48456292 - 48456326
Alignment:
| Q |
593 |
tttggatactgtatatagttaaggtgaattaaggg |
627 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
48456292 |
tttggatactgtatatagttaaggtgaattaaggg |
48456326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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