View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_low_11 (Length: 227)
Name: NF21353_low_11
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 11570802 - 11571021
Alignment:
| Q |
6 |
agagaatacccctgaacttaagaaacttccttaacattttaattacgtctttttaggtgaagatcgtcgtcacccttccataataagcaataccttaacc |
105 |
Q |
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| T |
11570802 |
agagaatacccctgagcttaagaaacttccttaacattttaattacgtctttttaggtgaagatcatcgtcacccttccataataagcaataccttaacc |
11570901 |
T |
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| Q |
106 |
aggatgcaagaagaaaagttgttagaagtccttacggaaaataagaaggcattggagactatcaagttcaagagatctatcaaacaactttcagactctc |
205 |
Q |
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| T |
11570902 |
aggatgcaagaa--aaggttgttagaagtccttacggaaaataagaaggcattggagactatcaagttcaagagatctatcaaacaactttcagactctc |
11570999 |
T |
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| Q |
206 |
aacacttcattgatcataccaa |
227 |
Q |
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| T |
11571000 |
aacacttcattgatcataccaa |
11571021 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 15553396 - 15553342
Alignment:
| Q |
170 |
agttcaagagatctatcaaacaactttcagactctcaacacttcattgatcatac |
224 |
Q |
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| T |
15553396 |
agttcaaaagatcaatcaaacaattgttagactctccacacttcattgatcatac |
15553342 |
T |
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