View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_low_12 (Length: 215)
Name: NF21353_low_12
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_low_12 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 3072079 - 3071865
Alignment:
| Q |
1 |
tactcaatcatcataattcactgcaacactttggatgagtgtagagctaaaaaagtttgacagagatcaacgtatgagattgttactggaattttgcttg |
100 |
Q |
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| T |
3072079 |
tactcaatcatcataattcactgcaacactttggatgagtgtagagctaaaaaagtttgacagagatcaacgtatgagattgttactggaattttgcttg |
3071980 |
T |
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| Q |
101 |
tcaattaatatattattgaagattaaggttatgtatttctcatgattatactgttatgagtttcagaaaactctacgtaccgaattttttgactaaattg |
200 |
Q |
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| T |
3071979 |
tcaattaatatattattgaagattaagattatgtatttctcatgattatactgttatgagtttcagaaaactctacgtaccgaattttttgactaaattg |
3071880 |
T |
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| Q |
201 |
aaccattgatctttt |
215 |
Q |
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| T |
3071879 |
aaccattgatctttt |
3071865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 21154893 - 21154761
Alignment:
| Q |
83 |
ttactggaattttgcttgtcaattaatatattattgaagattaaggttatgtatttctcatgattatactgttatgagtttcagaaaactctacgtaccg |
182 |
Q |
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||||||||||||||| |||||| | | |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
21154893 |
ttactggaattttgcctgtcaaggacttcattattgaagattaagattatgtatttctcatgaatatactgttatgagtttcagaaaactctaggtaccg |
21154794 |
T |
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| Q |
183 |
aattttttgactaaattgaaccattgatctttt |
215 |
Q |
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| T |
21154793 |
agttttttgactaaattgaaccattgatctttt |
21154761 |
T |
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