View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21353_low_8 (Length: 263)
Name: NF21353_low_8
Description: NF21353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21353_low_8 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 12438553 - 12438799
Alignment:
| Q |
18 |
gcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagcctttt-taatactcttg |
116 |
Q |
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| T |
12438553 |
gcttttaaatattttagttcttgaagatttatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagccttttttaatactcttg |
12438652 |
T |
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| Q |
117 |
gatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctgcatatcaagtgtacattcagacta |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12438653 |
gatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctgcatatcaagtgtacattcagacta |
12438752 |
T |
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| Q |
217 |
tctaactgttctatctgagttttacacgattattaagaaaatgatga |
263 |
Q |
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| T |
12438753 |
tctaattgttctatctgagttttacacgattattaagaaaatgatga |
12438799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 26602659 - 26602621
Alignment:
| Q |
223 |
tgttctatctgagttttacacgattattaagaaaatgat |
261 |
Q |
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| T |
26602659 |
tgttctatttgagttttacacgattattaagaaaatgat |
26602621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 12340089 - 12340060
Alignment:
| Q |
232 |
tgagttttacacgattattaagaaaatgat |
261 |
Q |
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| T |
12340089 |
tgagttttacacgattattaagaaaatgat |
12340060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 2433433 - 2433258
Alignment:
| Q |
18 |
gcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagcct-ttttaatactcttg |
116 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||| |||||| ||| |||||| || || ||||||||||||||||||| ||||| ||||| | |
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| T |
2433433 |
gcttttacatatttcagttcttgaaaatttatttcatcaatatatcctttgtttccaaagacttgtctaacttctgcttgagccttttttagcactctag |
2433334 |
T |
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| Q |
117 |
gatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg |
192 |
Q |
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| T |
2433333 |
ggtttttcatcatttctgaaaaagcccattctaaagttgaagatgttgtttcacttccagcaaaaatgatatcctg |
2433258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 41621022 - 41621199
Alignment:
| Q |
18 |
gcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagccttttt-aatactcttg |
116 |
Q |
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||||||| | |||| ||||||| ||||| |||||||||||||||| |||| ||| | |||| ||||||||| |||||||| |||| |||| ||| | |
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| T |
41621022 |
gcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgctaacaaaagcatgtctaacttcttcttgagcccttttcaatattctag |
41621121 |
T |
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| Q |
117 |
gatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctgca |
194 |
Q |
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| T |
41621122 |
ggtttttcagcatttctgagaaggcccattccatagttgtagttgatggctcacttccaccaataataatatcctgca |
41621199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 41654501 - 41654343
Alignment:
| Q |
18 |
gcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagccttttt-aatactcttg |
116 |
Q |
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||||||| |||||| ||||||||||||| |||||||||||||||| |||| |||| | | || ||||||||| ||||||||||||| | |||||| | |
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| T |
41654501 |
gcttttagatatttcagttcttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaacttcttcttgagcctttttcattactctag |
41654402 |
T |
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| Q |
117 |
gatttttcaacatttccgaaaaggcccattctaaagttgtagctgatgtcccacttcca |
175 |
Q |
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| T |
41654401 |
ggtttttcagcatttctgagaaagcccattgtatagttaaggatgatgtctcacttcca |
41654343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 41646966 - 41646837
Alignment:
| Q |
18 |
gcttttacatattttagttcttgaagattcatttcatcaacatatcccttgcttccaacaacatgcctaacttctgcttgagccttttt-aatactcttg |
116 |
Q |
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||||||| | |||| |||| |||||||| |||||||||||||||| |||| |||| | | || ||||||||| ||||||||||||| | |||||| | |
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| T |
41646966 |
gcttttagaaatttcagtttttgaagatctttttcatcaacatatcctctgctaccaaaagcttgtctaacttcttcttgagcctttttcattactctag |
41646867 |
T |
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| Q |
117 |
gatttttcaacatttccgaaaaggcccatt |
146 |
Q |
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| T |
41646866 |
ggtttttcagcatttctgagaaagcccatt |
41646837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 39157864 - 39157893
Alignment:
| Q |
232 |
tgagttttacacgattattaagaaaatgat |
261 |
Q |
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| T |
39157864 |
tgagttttacacgattattaagaaaatgat |
39157893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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