View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21354_low_2 (Length: 398)

Name: NF21354_low_2
Description: NF21354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21354_low_2
NF21354_low_2
[»] chr2 (11 HSPs)
chr2 (1-384)||(30384782-30385165)
chr2 (40-384)||(30395573-30395917)
chr2 (68-383)||(23783298-23783613)
chr2 (69-383)||(23768470-23768784)
chr2 (62-383)||(30476368-30476689)
chr2 (52-368)||(30437406-30437722)
chr2 (62-371)||(30425128-30425437)
chr2 (52-371)||(30469217-30469536)
chr2 (48-384)||(30484532-30484868)
chr2 (48-383)||(8378942-8379277)
chr2 (62-371)||(30431161-30431470)
[»] chr5 (1 HSPs)
chr5 (52-383)||(41626791-41627122)
[»] chr8 (5 HSPs)
chr8 (217-371)||(15851600-15851754)
chr8 (217-365)||(15858506-15858654)
chr8 (217-371)||(15865568-15865722)
chr8 (196-371)||(15844365-15844540)
chr8 (60-111)||(15844625-15844676)


Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 30384782 - 30385165
Alignment:
Q  1 gttgtttatcgagactattttgttgcttggccttaacatgtaacattaatctttttgtgataggtcaccatgattttgtatgaggttcttaggttatacc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384782 gttgtttatcgagacttttttgttgcttggccttaacatgtaacattaatctttttgtgataggtcaccatgattttgtatgaggttcttaggttatacc 30384881  T
Q  101 ctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgctggagtggagattttcttaccaattcttttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384882 ctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgctggagtggagattttcttaccaattcttttgat 30384981  T
Q  201 tcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||    
T  30384982 tcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttttggaggaatttccaaagcaacaaatggaagagtttcattt 30385081  T
Q  301 tttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaatgacattgattttg 384  Q
    ||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  30385082 tttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagcaaaaatggcaatgacattgattttg 30385165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 40 - 384
Target Start/End: Original strand, 30395573 - 30395917
Alignment:
Q  40 gtaacattaatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatg 139  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||| |||||||     
T  30395573 gtaacataaatctttttgtaacaggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgtgaaagata 30395672  T
Q  140 tgaaacttggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaat 239  Q
    ||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  30395673 tgaaacttggaaacctgacattacctgctggagtggaggttttcttaccaattcttttgattcatcatgactgcaaactatggggcgatgatgctaaaat 30395772  T
Q  240 gttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaa 339  Q
    |||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| || || ||||||||||||    
T  30395773 gttcaatcctgagagattttccggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggggtccaagaatttgcattggacaa 30395872  T
Q  340 aacttttctctattggaagcaaagatggcaatgacattgattttg 384  Q
    |||||||| ||| ||||||||||||||||| || || ||||||||    
T  30395873 aacttttccctaatggaagcaaagatggcattgtcaatgattttg 30395917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 68 - 383
Target Start/End: Complemental strand, 23783613 - 23783298
Alignment:
Q  68 ccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgc 167  Q
    |||||||||||||||||||| | ||||| |||||||| ||||  ||| |||||||||| |||||||| ||| | ||||||||| |  | ||| ||  |||    
T  23783613 ccatgattttgtatgaggttttgaggttgtaccctcctgtaaccggcgttgctcgaaaagttgagaatgatataaaacttggagacttgacattatatgc 23783514  T
Q  168 tggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggagga 267  Q
    |||| ||||| ||| | | |||||| |||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||    
T  23783513 tggaatggaggtttacatgccaattgttttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtgga 23783414  T
Q  268 atttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaagatgg 367  Q
    |||||||||||||| ||||||||| |||||| |||||| ||||||  ||||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  23783413 atttccaaagcaacaaacggtagattttcatattttccgtttggagcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatgg 23783314  T
Q  368 caatgacattgatttt 383  Q
    ||||| ||||||||||    
T  23783313 caatggcattgatttt 23783298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 69 - 383
Target Start/End: Original strand, 23768470 - 23768784
Alignment:
Q  69 catgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctgct 168  Q
    ||||||||||||||||||| | ||||| ||||||||  |||  ||| || ||||||| |||||||| ||| | ||||||||| |  | ||| ||  ||||    
T  23768470 catgattttgtatgaggttttgaggttgtaccctcctataaccggcgtttctcgaaaagttgagaatgatataaaacttggagacttgacattatatgct 23768569  T
Q  169 ggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaa 268  Q
    ||| ||||  ||| ||| || ||| |||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||    
T  23768570 ggaatggatgtttacttgccgattgttttgattcaccatgattgtgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaa 23768669  T
Q  269 tttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaagatggc 368  Q
    ||||||||||||| ||||||||| |||||| |||||| ||||||   |||||||| |||||||||||||| | |||||||||||||||||||||||||||    
T  23768670 tttccaaagcaacaaacggtagattttcatattttccgtttggagcaggtcctagaatctgcattggacagaccttttctctattggaagcaaagatggc 23768769  T
Q  369 aatgacattgatttt 383  Q
    |||| ||||||||||    
T  23768770 aatggcattgatttt 23768784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 62 - 383
Target Start/End: Original strand, 30476368 - 30476689
Alignment:
Q  62 aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattg-gccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacac 160  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| ||| | | ||| |||||| |  | | |||||||| ||||||||||| ||||||     
T  30476368 aggtcaccatgattttgtatgaggttcttagattatacccacccgcaatcgcgactt-ctcgaagtactcacaaagatgtcaaacttggaaacctaacat 30476466  T
Q  161 tacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttc 260  Q
    |||| || |||||| | |||  |||||| ||  ||||| |||||||||||| ||||||||||||||| ||||||||  ||||||||||||| ||||||||    
T  30476467 taccagccggagtgcaaattaccttaccgatagttttggttcaccatgactccgaactatggggtgaagatgctaaggtgttcaatcctgagagattttc 30476566  T
Q  261 tggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagca 360  Q
    ||||||||||||||||||||| || || ||| |||||||||||||||||||| ||||||| || || |||||||||||||| |||||  | |||||||||    
T  30476567 tggaggaatttccaaagcaacaaatgggagattttcattttttccatttggagggggtccaagaatttgcattggacaaaatttttccatgttggaagca 30476666  T
Q  361 aagatggcaatgacattgatttt 383  Q
    |||||||||||| || |||||||    
T  30476667 aagatggcaatggcaatgatttt 30476689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 52 - 368
Target Start/End: Original strand, 30437406 - 30437722
Alignment:
Q  52 tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa 151  Q
    |||||| || ||||||| ||||||||||| |||||||||||||||||||| || ||||| |  |||||||||| |||| | |||||||||||||||||||    
T  30437406 tttttgagacaggtcacgatgattttgtacgaggttcttaggttatacccaccagtaatcgaacttgctcgaagtgttcacaaagatgtgaaacttggaa 30437505  T
Q  152 atctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctga 251  Q
    | |||||| ||||||| |||||| | |||  |||||| ||  ||||  |||||||||||| ||||||||||||||| ||||||||  |||||||||||||    
T  30437506 acctaacattacctgccggagtgcaaattaccttaccgatagttttagttcaccatgactccgaactatggggtgacgatgctaaggtgttcaatcctga 30437605  T
Q  252 aagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctcta 351  Q
     |||||||||| |||  |||  |||||||| || || |||  ||||||| ||||||||||| |||||||||| || ||||||||||| ||||||||| |     
T  30437606 gagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggagggggtcctagaatttgcattggacagaacttttctatg 30437705  T
Q  352 ttggaagcaaagatggc 368  Q
    |||||||||||||||||    
T  30437706 ttggaagcaaagatggc 30437722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 62 - 371
Target Start/End: Original strand, 30425128 - 30425437
Alignment:
Q  62 aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacact 161  Q
    ||||||| ||||||||||| |||||||||||||||||||| || | ||| |  |||||||||| |||| | |||||||||| ||||||||| ||| || |    
T  30425128 aggtcactatgattttgtacgaggttcttaggttatacccaccagcaatcgcgcttgctcgaagtgttcacaaagatgtgatacttggaaacctagcatt 30425227  T
Q  162 acctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttct 261  Q
     || || |||||| || |||||||| | ||  ||||| |||||||||||   |||||||||||||||||||||||  |||||||||| || ||||||||     
T  30425228 gccagccggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgatgatgctaaggtgttcaatcccgagagattttca 30425327  T
Q  262 ggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaa 361  Q
    | |||  |||  |||||||| || || |||  ||||||||||||||||||| |||||||||| || ||||||||||||||||||||| | ||||||||||    
T  30425328 gaaggtgttttaaaagcaacaaatggaagaaattcattttttccatttggagggggtcctagaatttgcattggacaaaacttttctatgttggaagcaa 30425427  T
Q  362 agatggcaat 371  Q
    ||||||||||    
T  30425428 agatggcaat 30425437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 52 - 371
Target Start/End: Original strand, 30469217 - 30469536
Alignment:
Q  52 tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa 151  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||  ||| | |||||||| ||||||||||    
T  30469217 tttttgagacaggtcaccatgattttgtatgaggttcttaggttatacccaccagtaatcgcacttgctcgaagagttcacaaagatgttaaacttggaa 30469316  T
Q  152 atctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctga 251  Q
    | ||| || | || || |||||| || |||||||| | ||  || || |||||||||||   |||||||||||||| ||||||||  |||||||||| ||    
T  30469317 acctagcattgccagccggagtgcaggttttcttatcgataattatggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccga 30469416  T
Q  252 aagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctcta 351  Q
     |||||||||| |||  |||  |||||||| || || |||  ||||||||||||||||| | |||||||||| || ||||||||||| ||||||||  |     
T  30469417 gagattttctgaaggtgttttaaaagcaaccaatggaagaaattcattttttccatttgcagggggtcctagaatttgcattggacagaacttttccatg 30469516  T
Q  352 ttggaagcaaagatggcaat 371  Q
    ||||||||||||||||||||    
T  30469517 ttggaagcaaagatggcaat 30469536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 48 - 384
Target Start/End: Original strand, 30484532 - 30484868
Alignment:
Q  48 aatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaactt 147  Q
    ||||||||||||| || | ||||||||||||||||||||||| ||||||||||| ||  |||  |  ||| |||||    || | ||||| || ||| ||    
T  30484532 aatctttttgtgacagatgaccatgattttgtatgaggttctaaggttatacccaccaataaccgtgcttcctcgagccattcacaaagacgtaaaagtt 30484631  T
Q  148 ggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatc 247  Q
    ||||| |||||| ||||||| |||||  |||||  |||||||||  ||| |||||||||  ||   |||||||||||||| ||||||||  |||||||||    
T  30484632 ggaaacctaacattacctgccggagtccagattaccttaccaatagtttggattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaatc 30484731  T
Q  248 ctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttc 347  Q
    |||| |||||| | | |||| |||| |||||||| || ||||||  ||||||||||||||||||| |||||||||| || || |||||||||||||||||    
T  30484732 ctgagagatttgcagaaggagtttcaaaagcaacaaatggtagaaattcattttttccatttggagggggtcctagaatttgtattggacaaaacttttc 30484831  T
Q  348 tctattggaagcaaagatggcaatgacattgattttg 384  Q
      | |||||||||||||||||||| ||||||||||||    
T  30484832 catgttggaagcaaagatggcaataacattgattttg 30484868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 48 - 383
Target Start/End: Complemental strand, 8379277 - 8378942
Alignment:
Q  48 aatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaactt 147  Q
    ||||||||||||| || || | |||||||||||||||||||| ||||| || || || | | ||||  || ||||| ||||||  |||||  | ||  ||    
T  8379277 aatctttttgtgacagctccctatgattttgtatgaggttctaaggttgtatccaccagcatttggtgttactcgatatgttggcaaagacataaagttt 8379178  T
Q  148 ggaaatctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatc 247  Q
    |||||  |   | ||||||||||||||||  |||||||||||||| ||||| |||| ||| ||   |||||||||||||||||||| || ||||||||||    
T  8379177 ggaaacatggaagtacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatc 8379078  T
Q  248 ctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttc 347  Q
    |||| |||||| ||| |||||||||||||||||| || |||||| ||  || ||||||||||||| ||||||||||  | ||||| ||||||||||||||    
T  8379077 ctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatattttccatttggagggggtcctagagtttgcatgggacaaaacttttc 8378978  T
Q  348 tctattggaagcaaagatggcaatgacattgatttt 383  Q
     ||||||||||||||||||||| || || |||||||    
T  8378977 cctattggaagcaaagatggcagtgtcaatgatttt 8378942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 62 - 371
Target Start/End: Original strand, 30431161 - 30431470
Alignment:
Q  62 aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacact 161  Q
    ||||||| ||||||||||| |||||||||||||||||||| || | ||| |  ||| |||||| || | | |||||| ||| ||||||||| |||||| |    
T  30431161 aggtcactatgattttgtacgaggttcttaggttatacccaccagaaatcgcgcttactcgaagtgatcacaaagatatgacacttggaaacctaacatt 30431260  T
Q  162 acctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttct 261  Q
    |||||| |||||| || |||||||| | ||  ||||| |||||||||||   |||||||||||||| ||||||||  |||||||||| || ||||||||     
T  30431261 acctgcaggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccgagagattttca 30431360  T
Q  262 ggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaa 361  Q
    | |||  |||  |||||||| || || |||  ||||||| ||||||||| | |||||||||| || || |||||||||||||||||  | ||||||||||    
T  30431361 gaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaagggggtcctagaatttgaattggacaaaacttttccatgttggaagcaa 30431460  T
Q  362 agatggcaat 371  Q
    ||||||||||    
T  30431461 agatggcaat 30431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 52 - 383
Target Start/End: Complemental strand, 41627122 - 41626791
Alignment:
Q  52 tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa 151  Q
    ||||||| |||||| ||||||||||||||||||||| | || ||||| |||||| ||||||  ||| | ||||| ||||| ||| |||||||||||||||    
T  41627122 tttttgtcataggttaccatgattttgtatgaggttatgagattatatcctcccataattgagctttcgcgaaacgttgaaaaaaatgtgaaacttggaa 41627023  T
Q  152 atctaacactacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctga 251  Q
    | |||||| || |||||||||||||| ||||| | |||||| | ||| | |||||||| || ||| ||||||||||||||||||||||||||||||||||    
T  41627022 acctaacattatctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctga 41626923  T
Q  252 aagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattggacaaaacttttctcta 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41626922 aagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattgggcaaaacttttctcta 41626823  T
Q  352 ttggaagcaaagatggcaatgacattgatttt 383  Q
    ||||||||||||||||||||||||||||||||    
T  41626822 ttggaagcaaagatggcaatgacattgatttt 41626791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 15851754 - 15851600
Alignment:
Q  217 ctatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggg 316  Q
    ||||||||||||||||| || | ||||||||||||| | ||||||| ||||||| | || || || || ||   |||||| | | | || ||||||||||    
T  15851754 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcccttttggatggg 15851655  T
Q  317 gtcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 371  Q
    ||||||| || ||  |||||||||||||| |  |||| ||||||||||| |||||    
T  15851654 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcaat 15851600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 365
Target Start/End: Complemental strand, 15858654 - 15858506
Alignment:
Q  217 ctatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggg 316  Q
    ||||||||||||||||| ||   |||||| |||||||| ||| ||| ||||||| | || ||||| || ||   |||||| | ||| || ||||||||||    
T  15858654 ctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttggatggg 15858555  T
Q  317 gtcctaggatctgcattggacaaaacttttctctattggaagcaaagat 365  Q
    ||||||| || ||  |||||||||||||| |  |||| |||||||||||    
T  15858554 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 15858506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 15865722 - 15865568
Alignment:
Q  217 ctatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggg 316  Q
    ||||||||||||||||| ||   |||||| |||||||| ||| ||| ||||||| | || || || || || | |||||| | ||| || ||||||||||    
T  15865722 ctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttggatggg 15865623  T
Q  317 gtcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 371  Q
    ||||||| || ||  |||||||||||||| |  || | ||||||||||| |||||    
T  15865622 gtcctagaatttgtcttggacaaaactttgccttactagaagcaaagatagcaat 15865568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 371
Target Start/End: Complemental strand, 15844540 - 15844365
Alignment:
Q  196 ttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttctggaggaatttccaaagcaacgaacggtagagttt 295  Q
    ||||||||||||||    || |||||||| |||||||| ||   |||||| || ||||| ||| ||| ||||||| | || ||||| || ||   |||||    
T  15844540 ttgattcaccatgatcaagatctatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagttt 15844441  T
Q  296 cattttttccatttggatggggtcctaggatctgcattggacaaaacttttctctattggaagcaaagatggcaat 371  Q
    | | ||| || ||||||||||||||||| || ||  |||||||||||||| |  |||| ||||||||||| |||||    
T  15844440 cttatttcccctttggatggggtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaat 15844365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 15844676 - 15844625
Alignment:
Q  60 ataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaatt 111  Q
    |||||| |||||||||||||| ||||| || |||||||||||||| ||||||    
T  15844676 ataggttaccatgattttgtacgaggtactaaggttataccctcctgtaatt 15844625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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