View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21354_low_3 (Length: 386)
Name: NF21354_low_3
Description: NF21354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21354_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 22139714 - 22139354
Alignment:
| Q |
20 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaaacaaagtaatgttttggattgtgttagcaagtatgcttaaggatg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22139714 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaa-caaagtaatgttttggattgtgttagcaagtatgcttaaggatg |
22139616 |
T |
|
| Q |
120 |
cnnnnnnnnnnnnnnnntat----cgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctc-ttagttg |
214 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22139615 |
caaaaaaaataaaaataaataaatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctccttagttg |
22139516 |
T |
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| Q |
215 |
aaaagcttaattcttctagttataagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22139515 |
aaaagcttaattcttctagttataagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcat |
22139416 |
T |
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| Q |
315 |
ttttatgatttagaggattgtgtgtttaaaaatattgtagttaactatatttttctcctatg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22139415 |
ttttatgatttagaggattgtgtgtttaaaaatattgtagttaactatatttttctcctatg |
22139354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 21965791 - 21965438
Alignment:
| Q |
20 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaaacaaagtaatgttttggattgtgttagcaagtatgcttaaggatg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21965791 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaa-caaagtaatgttttggattgtgttagcacgtatgcttaaggatg |
21965693 |
T |
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| Q |
120 |
cnnnnnnnnnnnnnnnntatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctcttagttgaaaag |
219 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
21965692 |
caaaaaaaaaaaaaaaatatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaa-tctc-cttagttgaaaag |
21965595 |
T |
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| Q |
220 |
cttaattcttctagttataagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcattttta |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21965594 |
cttaattcttcaagttataagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcattttta |
21965495 |
T |
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| Q |
320 |
tgatttagaggattgtgtgtttaaaaatattgtagttaactatatttttctcctatg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21965494 |
tgatttagaggattgtgtgtttaaaaatattgtagttaactatatttttctcctatg |
21965438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 21988227 - 21987874
Alignment:
| Q |
20 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaaacaaagtaatgttttggattgtgttagcaagtatgcttaaggatg |
119 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21988227 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaa-caaagtaatgttttggattgtgttagcacgtatgcttaaggatg |
21988129 |
T |
|
| Q |
120 |
cnnnnnnnnnnnnnnnntatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctcttagttgaaaag |
219 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
21988128 |
caaaaaaaaaaaaaaaatatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaa-tctc-cttagttgaaaag |
21988031 |
T |
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| Q |
220 |
cttaattcttctagttataagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcattttta |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21988030 |
cttaattcttcaagttataagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcattttta |
21987931 |
T |
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| Q |
320 |
tgatttagaggattgtgtgtttaaaaatattgtagttaactatatttttctcctatg |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21987930 |
tgatttagaggattgtgtgtttaaaaatattgtagttaactatatttttctcctatg |
21987874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 137 - 376
Target Start/End: Original strand, 18940913 - 18941147
Alignment:
| Q |
137 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctcttagttgaaaagcttaattcttctagtta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
18940913 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaa-tctc-cttagttgaaaagcttaattcttctagtta |
18941010 |
T |
|
| Q |
237 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcac-tttaacagaacataatgcatttttatgatttagaggattgt |
335 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| || |
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| T |
18941011 |
taagcttgctagtcatatgtacttgactcggacaaaagcttctatattttataatcacttttaacag---ataatgcatttttatgattta-aggatagt |
18941106 |
T |
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| Q |
336 |
gtgtttaaaaatattgtagttaactatatttttctcctatg |
376 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18941107 |
gtgtttaaaaatattgtagttaactatttttttctcctatg |
18941147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 18940788 - 18940887
Alignment:
| Q |
20 |
ggtatgatatttatttcttatttttcttcagaaactaactatggattagtataaaacaaagtaatgttttggattgtgttagcaagtatgcttaaggatg |
119 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
18940788 |
ggtatgatatttatttcttatttttcttcaaaaactaactatggattagtat-aaacaaagtaatgttttggattgtgttagtacgtatgcttaaggatg |
18940886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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