View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21354_low_4 (Length: 312)
Name: NF21354_low_4
Description: NF21354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21354_low_4 |
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| [»] scaffold0341 (2 HSPs) |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 1090 - 795
Alignment:
| Q |
17 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1090 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacga |
991 |
T |
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| Q |
117 |
tgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaaggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
990 |
tgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaaggaa |
891 |
T |
|
| Q |
217 |
gtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtagga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
890 |
gtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtagga |
795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 8744 - 8448
Alignment:
| Q |
17 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaat-cgaaaagaagcaattggatggtacgacg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8744 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatacgaaaagaagcaattggatggtacgacg |
8645 |
T |
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| Q |
116 |
atgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaagga |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8644 |
atgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaagga |
8545 |
T |
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| Q |
216 |
agtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtagga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8544 |
agtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtagga |
8448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 6507065 - 6506770
Alignment:
| Q |
17 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacga |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6507065 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacga |
6506966 |
T |
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| Q |
117 |
tgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaaggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506965 |
tgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaaggaa |
6506866 |
T |
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| Q |
217 |
gtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtagga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506865 |
gtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatatgctgtagga |
6506770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 6521670 - 6521832
Alignment:
| Q |
17 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacga |
116 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |
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| T |
6521670 |
atgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacga |
6521769 |
T |
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| Q |
117 |
tgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc |
179 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||||| |
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| T |
6521770 |
tgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgc |
6521832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 6517353 - 6517076
Alignment:
| Q |
29 |
atgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcat |
128 |
Q |
| |
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||||||||| |||||| |||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||| |||||||| ||||| | |||||| |
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| T |
6517353 |
atgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtcaaaatagaaaacaagcaattggttggtacgatgatgatagatgcat |
6517254 |
T |
|
| Q |
129 |
gttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacc-tgccatgattgcatggaatttgcagaacgcaacaaaggaagtcgaagatga |
227 |
Q |
| |
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|||||||| |||| |||||||||||||||| || |||| | |||| | |||| ||||||| |||| ||| || | ||| |||||||| |
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| T |
6517253 |
gttgcgttactcaagccgttcaatatttggtctctatgacactagaccttattatga-agcatggagtttgaagacggcgataaa------tgaagatga |
6517161 |
T |
|
| Q |
228 |
atttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtagga |
312 |
Q |
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||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
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| T |
6517160 |
atttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtagga |
6517076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 6512966 - 6512681
Alignment:
| Q |
17 |
atgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacga |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||| | | |||||| ||| | ||||||||||||||||||||||||||||||| || ||||| ||||| || || |
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| T |
6512966 |
atgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtcaaaatcgaaaagaggctattggttggtatgatga |
6512867 |
T |
|
| Q |
117 |
tgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaacgcaacaaaggaa |
216 |
Q |
| |
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|| | |||||||||||||| |||| ||||||||||||| ||| | ||||||| ||||| | | ||||| |||| | || || ||||| |
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| T |
6512866 |
agatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagacctttttatttaggatggagtttgaacaatgctacaaa---- |
6512771 |
T |
|
| Q |
217 |
gtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgt |
308 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| |||| |||| || || |||||||||||||||||||| |
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| T |
6512770 |
--tgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgt |
6512681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 47778041 - 47778150
Alignment:
| Q |
70 |
acacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaa |
169 |
Q |
| |
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||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||| | ||||||||| |
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| T |
47778041 |
acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa |
47778140 |
T |
|
| Q |
170 |
tgggacctgc |
179 |
Q |
| |
|
| |||||||| |
|
|
| T |
47778141 |
ttggacctgc |
47778150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 6523725 - 6523810
Alignment:
| Q |
70 |
acacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
155 |
Q |
| |
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||||| ||||||| ||| | ||||||||||||||| ||||| || |||||||||||||||||||||| ||| ||||||| ||||| |
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| T |
6523725 |
acacagctttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt |
6523810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 47781969 - 47782034
Alignment:
| Q |
90 |
aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatt |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| |||| ||| ||||||| ||||| |
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| T |
47781969 |
aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatatt |
47782034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 47788183 - 47788272
Alignment:
| Q |
90 |
aaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc |
179 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| |||| ||| ||||||||||| | ||| | || ||||| |||||||| |
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|
| T |
47788183 |
aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgc |
47788272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 6521896 - 6521959
Alignment:
| Q |
249 |
tttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtagga |
312 |
Q |
| |
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||| ||| ||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |
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| T |
6521896 |
ttttttggatagtttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtagga |
6521959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 722204 - 722305
Alignment:
| Q |
29 |
atgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtcaaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcat |
128 |
Q |
| |
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|||||||||||| ||||| | || |||||| || |||||||||||||| || |||| ||||||||||||||||||| |||||| |||||||||||||| |
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| T |
722204 |
atgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaaaccgaaaagaagcaattggattgtacgatgatgaaaaatgcat |
722302 |
T |
|
| Q |
129 |
gtt |
131 |
Q |
| |
|
||| |
|
|
| T |
722303 |
gtt |
722305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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