View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21354_low_6 (Length: 227)
Name: NF21354_low_6
Description: NF21354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21354_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 44281291 - 44281512
Alignment:
| Q |
6 |
actaacaagtttgaatctttcaactgaaaaatatattgggttagttacatattattcctcttcttcttatatgaattatgctgttttaagaatcctcatg |
105 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281291 |
actaacaagtttgaatctttcaactgaaacatatattgggttagttacatattattcctcttcttcttatatgaattatgctgttttaagaatcctcatg |
44281390 |
T |
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| Q |
106 |
taactccctatttctgttccactgaactccatatttctcnnnnnnnnnnnnnnnnnnncaagaatacgcaagaacttctcaagagaatccttgttacatg |
205 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281391 |
taactccctatttctgttccactgaacaccatatttctctttttttctttttctttttcaagaatacgcaagaacttctcaagagaatccttgttacatg |
44281490 |
T |
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| Q |
206 |
gggactgagaccagtgttgttc |
227 |
Q |
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||||||||||| |||||||||| |
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| T |
44281491 |
gggactgagactagtgttgttc |
44281512 |
T |
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