View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21355_high_10 (Length: 309)

Name: NF21355_high_10
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21355_high_10
NF21355_high_10
[»] chr6 (3 HSPs)
chr6 (113-273)||(2594036-2594197)
chr6 (1-220)||(2635798-2636014)
chr6 (1-121)||(2593731-2593851)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-220)||(3995-4211)
[»] chr8 (1 HSPs)
chr8 (58-214)||(18405932-18406084)
[»] chr1 (1 HSPs)
chr1 (58-214)||(49551736-49551888)
[»] chr4 (1 HSPs)
chr4 (115-214)||(9817334-9817431)
[»] chr3 (2 HSPs)
chr3 (115-214)||(8519368-8519465)
chr3 (115-214)||(18452454-18452551)
[»] chr2 (1 HSPs)
chr2 (115-214)||(19097097-19097194)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 113 - 273
Target Start/End: Original strand, 2594036 - 2594197
Alignment:
Q  113 taagttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataaca 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  2594036 taagttcaaacattaatttaacacatactagtaaacataatgtctaacattatttaatactagatttaatacttccaagtacaagcctagcaaaataaca 2594135  T
Q  212 aaaaatatatttccgcgttgaaacacattgaaaaatatattgttcaagtttaatactttcaa 273  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  2594136 aaaaatatatttcagcgttgaaacacattgaaaattatattgttcaagtttaatactttcaa 2594197  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2635798 - 2636014
Alignment:
Q  1 tattttgtaaacatagtcaatattataaccgtcttctaaaaatgttgtcaaccatatctcaaacaagatctaatttaaccacacatccacaaaagttgta 100  Q
    ||||||||||| |||||| ||  |||||||| |||  |||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  2635798 tattttgtaaatatagtcgat--tataaccggcttaaaaaaat-ttgtcaatcatatcttaaacaagatctaatttaagcacacatccacaaa-gttgta 2635893  T
Q  101 ttacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcct 199  Q
    |||||| || |||||||||| | || ||||||||||||| ||||||||| ||||||||||||||||||||||||  || |||||||  ||||| || |||    
T  2635894 ttacaataaagttaagttcacaaattaatttaacacatagtagtaaacaaaatgtctaacattatttaatactaggttaaatactttgaagtataaacct 2635993  T
Q  200 agcaaaataacaaaaaatata 220  Q
    |  ||||||||||||||||||    
T  2635994 aaaaaaataacaaaaaatata 2636014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2593731 - 2593851
Alignment:
Q  1 tattttgtaaacatagtcaatattataaccgtcttctaaaaatgttgtcaaccatatctcaaacaagatctaatttaaccacacatccacaaaagttgta 100  Q
    ||||| ||||| |||||| |||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593731 tatttagtaaatatagtcgatattataaccggcttctaaaatttttgtcaatcatatctcaaacaagatctaatttaaccacacatccacaaaagttgta 2593830  T
Q  101 ttacaaaaatgttaagttcaa 121  Q
    |||||||||||||||||||||    
T  2593831 ttacaaaaatgttaagttcaa 2593851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4211 - 3995
Alignment:
Q  1 tattttgtaaacatagtcaatattataaccgtcttctaaaaatgttgtcaaccatatctcaaacaagatctaatttaaccacacatccacaaaagttgta 100  Q
    ||||||||||| |||||| ||  |||||||| |||  |||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  4211 tattttgtaaatatagtcgat--tataaccggcttaaaaaaat-ttgtcaatcatatcttaaacaagatctaatttaagcacacatccacaaa-gttgta 4116  T
Q  101 ttacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcct 199  Q
    |||||| || |||||||||| | || ||||||||||||| ||||||||| ||||||||||||||||||||||||  || |||||||  ||||| || |||    
T  4115 ttacaataaagttaagttcacaaattaatttaacacatagtagtaaacaaaatgtctaacattatttaatactaggttaaatactttgaagtataaacct 4016  T
Q  200 agcaaaataacaaaaaatata 220  Q
    |  ||||||||||||||||||    
T  4015 aaaaaaataacaaaaaatata 3995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 18406084 - 18405932
Alignment:
Q  58 ctcaaacaagatctaatttaaccacacatccacaaaagttgtattacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtct 156  Q
    ||||||||||||| |||||| | | ||| ||||||||| |||| || || ||  |  ||||||||||| |||| || ||||| |||||| || ||||||     
T  18406084 ctcaaacaagatcgaatttagcaatacaaccacaaaagatgtaatataataaaat--agttcaaacattaattcaagacataatagtaatcaaaatgtca 18405987  T
Q  157 aacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaaa 214  Q
    ||||||| || |||   | ||||||||||| ||||| |||||||||||||||||||||    
T  18405986 aacattacttgata---agtttaatacttcgaagtataagcctagcaaaataacaaaa 18405932  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 49551888 - 49551736
Alignment:
Q  58 ctcaaacaagatctaatttaaccacacatccacaaaagttgtattacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtct 156  Q
    ||||||||||||| |||||||| | ||| ||||||| | |||| || || ||  |  ||||||||||| |||| || ||||| |||||| || ||||||     
T  49551888 ctcaaacaagatcgaatttaacaatacaaccacaaagggtgtaatataataacat--agttcaaacattaattcaagacataatagtaatcaaaatgtca 49551791  T
Q  157 aacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaaa 214  Q
    ||||||| || |||   | |||||| |||| ||||| |||||||||||||||||||||    
T  49551790 aacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaaa 49551736  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 9817334 - 9817431
Alignment:
Q  115 agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa 213  Q
    ||||||||||| |||| || ||||| |||||| || |||||| ||||||| || |||   | |||||| |||| ||||| ||||||||||||||||||||    
T  9817334 agttcaaacattaattcaagacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa 9817430  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 8519368 - 8519465
Alignment:
Q  115 agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa 213  Q
    ||||||||||| |||| || ||||| |||||| || |||||| ||||||| || |||   | |||||| |||| ||||| ||||||||||||||||||||    
T  8519368 agttcaaacattaattcaagacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa 8519464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 18452551 - 18452454
Alignment:
Q  115 agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa 213  Q
    ||||||||||| |||| || ||||| |||||| || |||||| ||||||| || |||   | |||||| |||| ||||| ||||||||||||||||||||    
T  18452551 agttcaaacattaattcaagacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa 18452455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 19097097 - 19097194
Alignment:
Q  115 agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa 213  Q
    ||||||||||| |||| || ||||| |||||| || |||||| ||||||| || |||   | |||||| |||| ||||| ||||||||||||||||||||    
T  19097097 agttcaaacattaattcaatacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa 19097193  T

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