View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21355_high_12 (Length: 250)

Name: NF21355_high_12
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21355_high_12
NF21355_high_12
[»] chr6 (5 HSPs)
chr6 (1-232)||(33575833-33576064)
chr6 (16-137)||(5978705-5978826)
chr6 (15-59)||(33568661-33568705)
chr6 (183-232)||(19746870-19746919)
chr6 (29-75)||(19747033-19747079)
[»] chr3 (1 HSPs)
chr3 (1-232)||(36339778-36340009)
[»] scaffold0707 (1 HSPs)
scaffold0707 (15-59)||(5055-5099)
[»] chr1 (2 HSPs)
chr1 (3-53)||(17954036-17954086)
chr1 (15-62)||(39379422-39379469)
[»] chr7 (7 HSPs)
chr7 (183-232)||(26237459-26237508)
chr7 (3-53)||(24035416-24035466)
chr7 (14-72)||(26237278-26237336)
chr7 (195-232)||(24016646-24016683)
chr7 (14-59)||(26229881-26229926)
chr7 (183-232)||(26256620-26256669)
chr7 (15-59)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (185-232)||(25376921-25376968)
[»] chr4 (1 HSPs)
chr4 (15-63)||(3557388-3557436)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33575833 - 33576064
Alignment:
Q  1 agaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgta 100  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||    
T  33575833 agaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctattttgggaaatgatggtgttcatttta 33575932  T
Q  101 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575933 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 33576032  T
Q  201 tgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||||||||||||| ||||||||||||||    
T  33576033 tgtttcgcttgatcttttgacagagacataca 33576064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 5978705 - 5978826
Alignment:
Q  16 gttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgtagtggaactattaact 115  Q
    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| || | || |||||||||||  |||  ||||||||  |||| |    
T  5978705 gttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctcttatcgggaatgatggtgtgcatttgagtggaacggttaatt 5978804  T
Q  116 ggttagctattcacagtgacta 137  Q
    || ||||||||||| |||||||    
T  5978805 ggctagctattcacggtgacta 5978826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 33568661 - 33568705
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568661 agttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 19746919 - 19746870
Alignment:
Q  183 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||| ||| |||||||||||| |||||||||||||| ||||||||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacataca 19746870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  29 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 75  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 36339778 - 36340009
Alignment:
Q  1 agaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgta 100  Q
    |||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |||||||||||  |||  |    
T  36339778 agaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatggaatgatggtgtgcatttga 36339877  T
Q  101 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 200  Q
    ||||| ||||||||||||| ||| ||    | |||| || | |||||||   ||||| ||||  |||| ||  ||||  || ||||||| |||  |||||    
T  36339878 gtggagctattaactggttggctctttctggcgacttcgtatcaattgattgtggagaaacaagtaaagcttatattcctcttgttgagcaattggtgat 36339977  T
Q  201 tgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||||||||||||||||| ||||||||||    
T  36339978 tgtttcgcttgatctttcgacggagacataca 36340009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 5055 - 5099
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5055 agttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  3 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 53  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 62  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 26237459 - 26237508
Alignment:
Q  183 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  3 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 53  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  14 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 72  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 24016646 - 24016683
Alignment:
Q  195 tgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  24016646 tgtgattgtttctcttgatctttcgacggagacataca 24016683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  14 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 26256620 - 26256669
Alignment:
Q  183 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||| ||| ||||||| |||||||||||||||| || ||||||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 25376921 - 25376968
Alignment:
Q  185 ttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||||| ||||||||||||||| ||||| ||||| ||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacataca 25376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 63  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University