View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_high_14 (Length: 247)
Name: NF21355_high_14
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_high_14 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 2593674 - 2593446
Alignment:
| Q |
5 |
actacacattttaagtgttcctacttattcatatttagggcaacaagtaacaattgtagccacctatgacaataattnnnnnnnn----ttactttagat |
100 |
Q |
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| T |
2593674 |
actacacattttaagtgttcctacttattcatatttagggcaacaagtaataatcgtagccacctatgacaataattaaaaaaaaaaaattactttagat |
2593575 |
T |
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| Q |
101 |
gccacaaaaaagggcgcaaaaatcaagaagaaacgtcgccttaggaaaacgcttgcatcgaagacacttgaaaaacgtcccattttttgtaggtaacttt |
200 |
Q |
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| T |
2593574 |
gccacaaaaaagggcgcaaaaatcaagaagaaacgtcgcattaggaaaacgcttgcatcgaagacacttgaaaaacgt-cctttctttgtaggtaacttt |
2593476 |
T |
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| Q |
201 |
tacccatattcaattgttggtggaaaggat |
230 |
Q |
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| T |
2593475 |
aacccatattcagttgttggtggaaaggat |
2593446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2635746 - 2635516
Alignment:
| Q |
1 |
tatgactacacattttaagtgttcctacttattcatatttagggcaacaagtaacaattgtagccacctatgacaataattnnnnnnnn-ttactttaga |
99 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||||||||||||||| || ||||||| |
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| T |
2635746 |
tatgactacacattttaagtgttcctactgattcatatttagggaaacaagcaataattgtagccgcctatgacaataattaaaaaaacattgctttaga |
2635647 |
T |
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| Q |
100 |
tgccacaaaaaa-----gggcgcaaaaatcaagaagaaacgtcgccttaggaaaacgcttgcatcgaagacacttgaaaaacgtcccattttttgtaggt |
194 |
Q |
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| T |
2635646 |
tgccccaaaaaaaaaaagagcccaatgatcaagaaaaaacgtcgccttagacaaacgctcgcatcgaagacgcttgaaaaatgtcccatttttt-tagga |
2635548 |
T |
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| Q |
195 |
aacttttacccatattcaattgttggtggaaa |
226 |
Q |
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| T |
2635547 |
aacttctacccacattcaattgttggtggaaa |
2635516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 4263 - 4493
Alignment:
| Q |
1 |
tatgactacacattttaagtgttcctacttattcatatttagggcaacaagtaacaattgtagccacctatgacaataatt-nnnnnnnnttactttaga |
99 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||||| ||||||||||||||| || ||||||| |
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| T |
4263 |
tatgactacacattttaagtgttcctactgattcatatttagggaaacaagcaataattgtagccgcctatgacaataattaaaaaaacattgctttaga |
4362 |
T |
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| Q |
100 |
tgcc-----acaaaaaagggcgcaaaaatcaagaagaaacgtcgccttaggaaaacgcttgcatcgaagacacttgaaaaacgtcccattttttgtaggt |
194 |
Q |
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| T |
4363 |
tgccccaaaaaaaaaaagagcccaatgatcaagaaaaaacgtcgccttagacaaacgctcgcatcgaagacgcttgaaaaatgtcccatttttt-tagga |
4461 |
T |
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| Q |
195 |
aacttttacccatattcaattgttggtggaaa |
226 |
Q |
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||||| |||||| ||||||||||||||||||| |
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| T |
4462 |
aacttctacccacattcaattgttggtggaaa |
4493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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