View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_high_2 (Length: 473)
Name: NF21355_high_2
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 172 - 451
Target Start/End: Original strand, 48526974 - 48527254
Alignment:
| Q |
172 |
gaagatagagtttttgtaatgaaccgttgaggaatttgtttgagagatca-tgtgatgagggttttggattaagcgtcacttaggatggagtatctaaaa |
270 |
Q |
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| T |
48526974 |
gaagatagagtttttgtaatgaaccgttgaggaatttgtttgagagatcaatgtgatgagggttttggattaagggtcacttaggatggagtatctgaaa |
48527073 |
T |
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| Q |
271 |
tttaagcaagaaaattccatcaaagataagagcaagtactgataaagagtcacttaattaggataaagtatctgagtttaagcaagaaaaatatattaga |
370 |
Q |
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| T |
48527074 |
tttaagcaagaaaattccatcaaagataagagcaagtactgataaagagtcacttaattaggataaagtatctgagtttaagcaagaaaaatatattaga |
48527173 |
T |
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| Q |
371 |
gttaagagcaaatactgataaagggtctcttaggatagagtatttaatcaaaaaagttccatcagagtacagcacaacatc |
451 |
Q |
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| T |
48527174 |
gttaagagcaaatactgataaagggtctcttaggatagagtattgaagcaaaaaagttccatcagagtacagcacaacatc |
48527254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 10 - 172
Target Start/End: Original strand, 48526787 - 48526949
Alignment:
| Q |
10 |
attatacttgctaattgatatattttgcatgtgattaattgtgtttgtgaaatttaagttggtacagactatgtgtgatatagtggacttgtggaaatgt |
109 |
Q |
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| T |
48526787 |
attacacttgctaattgatatattttgcatgtgattaattgtgtttgtgaaatttaagttggtacagactatgtgtgatatagtggacttgtggaaatgt |
48526886 |
T |
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| Q |
110 |
tgaaaatttgaaggtttattgataaaccaatcaagttaggtagtttacctgagatgccgttgg |
172 |
Q |
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| T |
48526887 |
tgaaaatttgaaggtttattgataaaccaatcaagtcaagtagtttacctgagatgcggttgg |
48526949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 48764554 - 48764498
Alignment:
| Q |
187 |
gtaatgaaccgttgaggaatttgtttgagagatca-tgtgatgagggttttggatta |
242 |
Q |
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| T |
48764554 |
gtaatgaaccattgaggaaattgtctgagagatcaatgtgatgaaggttttggatta |
48764498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 48764328 - 48764283
Alignment:
| Q |
246 |
gtcacttaggatggagtatctaaaatttaagcaagaaaattccatca |
292 |
Q |
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| T |
48764328 |
gtcactgaggatggagtatctgaa-tttaagcaagaaaattccatca |
48764283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 48764659 - 48764611
Alignment:
| Q |
116 |
tttgaaggtttattgataaaccaatcaagttaggtagtttacctgagat |
164 |
Q |
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||||||||||| | |||||||||||||| | |||||| ||||||||||| |
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| T |
48764659 |
tttgaaggtttgtggataaaccaatcaactcaggtagcttacctgagat |
48764611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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