View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_high_4 (Length: 434)
Name: NF21355_high_4
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 44247669 - 44247259
Alignment:
| Q |
17 |
aattaaatcaggacatgatagacaaattaaaaatgtggtagataccgttattgttttacaagtgagtttttgaaagaaaaagaagtgaatgtttgcactt |
116 |
Q |
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| T |
44247669 |
aattaaatcaggacatgatagacaaattaaaaatgtggtagataccgttattgttttacaagtgagtttttgaaagaaaaagaagtgaatgtttgcactt |
44247570 |
T |
|
| Q |
117 |
gcaccgttttaatcttcaaaataacatatgataaccta---cctcaattttatttttatttgaccaacctcaatatttagnnnnnnnaaaccttatccaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44247569 |
gcaccgttttaatcttcaaaataacatatgataacctacctcctcaattttatttttatttgaccaacctcaatatttagtttttttaaaccttatccaa |
44247470 |
T |
|
| Q |
214 |
ttaaaatggatcctctcatgtaatatgagggttcgacgaaatcctccttgtttcatcatatcggagaggnnnnnnnntttagagttaagaatgtggacat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44247469 |
ttaaaatggatcctctcatgtaatatgagggttcgacgaaatcctccttgtttcatcatatcggagaggaaaaaaaatttagagttaagaatgtggacat |
44247370 |
T |
|
| Q |
314 |
atccaattaaaacttagagnnnnnnnattcatcactggacatatcctccattgtttatttttactatatattaattacaatttagtgttaagaatgtttt |
413 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44247369 |
atccaattaaaatttagagtttttttattcatcactggacatatcctccattgtttatttttactatatattaattacaatttagtgttaagaatgtttt |
44247270 |
T |
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| Q |
414 |
ttaaccctttg |
424 |
Q |
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| T |
44247269 |
ttaaccctttg |
44247259 |
T |
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