View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_low_11 (Length: 309)
Name: NF21355_low_11
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_low_11 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 113 - 273
Target Start/End: Original strand, 2594036 - 2594197
Alignment:
| Q |
113 |
taagttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataaca |
211 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
2594036 |
taagttcaaacattaatttaacacatactagtaaacataatgtctaacattatttaatactagatttaatacttccaagtacaagcctagcaaaataaca |
2594135 |
T |
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| Q |
212 |
aaaaatatatttccgcgttgaaacacattgaaaaatatattgttcaagtttaatactttcaa |
273 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2594136 |
aaaaatatatttcagcgttgaaacacattgaaaattatattgttcaagtttaatactttcaa |
2594197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2635798 - 2636014
Alignment:
| Q |
1 |
tattttgtaaacatagtcaatattataaccgtcttctaaaaatgttgtcaaccatatctcaaacaagatctaatttaaccacacatccacaaaagttgta |
100 |
Q |
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||||||||||| |||||| || |||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||| |
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| T |
2635798 |
tattttgtaaatatagtcgat--tataaccggcttaaaaaaat-ttgtcaatcatatcttaaacaagatctaatttaagcacacatccacaaa-gttgta |
2635893 |
T |
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| Q |
101 |
ttacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcct |
199 |
Q |
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|||||| || |||||||||| | || ||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||| ||||| || ||| |
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| T |
2635894 |
ttacaataaagttaagttcacaaattaatttaacacatagtagtaaacaaaatgtctaacattatttaatactaggttaaatactttgaagtataaacct |
2635993 |
T |
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| Q |
200 |
agcaaaataacaaaaaatata |
220 |
Q |
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| T |
2635994 |
aaaaaaataacaaaaaatata |
2636014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2593731 - 2593851
Alignment:
| Q |
1 |
tattttgtaaacatagtcaatattataaccgtcttctaaaaatgttgtcaaccatatctcaaacaagatctaatttaaccacacatccacaaaagttgta |
100 |
Q |
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||||| ||||| |||||| |||||||||||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2593731 |
tatttagtaaatatagtcgatattataaccggcttctaaaatttttgtcaatcatatctcaaacaagatctaatttaaccacacatccacaaaagttgta |
2593830 |
T |
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| Q |
101 |
ttacaaaaatgttaagttcaa |
121 |
Q |
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||||||||||||||||||||| |
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| T |
2593831 |
ttacaaaaatgttaagttcaa |
2593851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4211 - 3995
Alignment:
| Q |
1 |
tattttgtaaacatagtcaatattataaccgtcttctaaaaatgttgtcaaccatatctcaaacaagatctaatttaaccacacatccacaaaagttgta |
100 |
Q |
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||||||||||| |||||| || |||||||| ||| |||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||| |
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| T |
4211 |
tattttgtaaatatagtcgat--tataaccggcttaaaaaaat-ttgtcaatcatatcttaaacaagatctaatttaagcacacatccacaaa-gttgta |
4116 |
T |
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| Q |
101 |
ttacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcct |
199 |
Q |
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|||||| || |||||||||| | || ||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||| ||||| || ||| |
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| T |
4115 |
ttacaataaagttaagttcacaaattaatttaacacatagtagtaaacaaaatgtctaacattatttaatactaggttaaatactttgaagtataaacct |
4016 |
T |
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| Q |
200 |
agcaaaataacaaaaaatata |
220 |
Q |
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| T |
4015 |
aaaaaaataacaaaaaatata |
3995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 18406084 - 18405932
Alignment:
| Q |
58 |
ctcaaacaagatctaatttaaccacacatccacaaaagttgtattacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtct |
156 |
Q |
| |
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||||||||||||| |||||| | | ||| ||||||||| |||| || || || | ||||||||||| |||| || ||||| |||||| || |||||| |
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| T |
18406084 |
ctcaaacaagatcgaatttagcaatacaaccacaaaagatgtaatataataaaat--agttcaaacattaattcaagacataatagtaatcaaaatgtca |
18405987 |
T |
|
| Q |
157 |
aacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaaa |
214 |
Q |
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||||||| || ||| | ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
18405986 |
aacattacttgata---agtttaatacttcgaagtataagcctagcaaaataacaaaa |
18405932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 49551888 - 49551736
Alignment:
| Q |
58 |
ctcaaacaagatctaatttaaccacacatccacaaaagttgtattacaaaaatgttaagttcaaacat-aatttaacacatactagtaaacataatgtct |
156 |
Q |
| |
|
||||||||||||| |||||||| | ||| ||||||| | |||| || || || | ||||||||||| |||| || ||||| |||||| || |||||| |
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| T |
49551888 |
ctcaaacaagatcgaatttaacaatacaaccacaaagggtgtaatataataacat--agttcaaacattaattcaagacataatagtaatcaaaatgtca |
49551791 |
T |
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| Q |
157 |
aacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaaa |
214 |
Q |
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||||||| || ||| | |||||| |||| ||||| ||||||||||||||||||||| |
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| T |
49551790 |
aacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaaa |
49551736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 9817334 - 9817431
Alignment:
| Q |
115 |
agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa |
213 |
Q |
| |
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||||||||||| |||| || ||||| |||||| || |||||| ||||||| || ||| | |||||| |||| ||||| |||||||||||||||||||| |
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| T |
9817334 |
agttcaaacattaattcaagacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa |
9817430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 8519368 - 8519465
Alignment:
| Q |
115 |
agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa |
213 |
Q |
| |
|
||||||||||| |||| || ||||| |||||| || |||||| ||||||| || ||| | |||||| |||| ||||| |||||||||||||||||||| |
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|
| T |
8519368 |
agttcaaacattaattcaagacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa |
8519464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 18452551 - 18452454
Alignment:
| Q |
115 |
agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa |
213 |
Q |
| |
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||||||||||| |||| || ||||| |||||| || |||||| ||||||| || ||| | |||||| |||| ||||| |||||||||||||||||||| |
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| T |
18452551 |
agttcaaacattaattcaagacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa |
18452455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 19097097 - 19097194
Alignment:
| Q |
115 |
agttcaaacat-aatttaacacatactagtaaacataatgtctaacattatttaatactaaatttaatacttccaagtaaaagcctagcaaaataacaaa |
213 |
Q |
| |
|
||||||||||| |||| || ||||| |||||| || |||||| ||||||| || ||| | |||||| |||| ||||| |||||||||||||||||||| |
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| T |
19097097 |
agttcaaacattaattcaatacataatagtaatcaaaatgtcaaacattacttgata---agtttaatgcttcgaagtataagcctagcaaaataacaaa |
19097193 |
T |
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