View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_low_12 (Length: 272)
Name: NF21355_low_12
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_low_12 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 44635807 - 44635604
Alignment:
| Q |
47 |
atgcaacactagagatcgaaagtgatgaatttgattactcaaaaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaac |
146 |
Q |
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| T |
44635807 |
atgcaacactagagatcgaaagcgatgaatttgattactcaaaaagatcacaatggctacgtgccgcagttttaggagctaatgatggattagtttcaac |
44635708 |
T |
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| Q |
147 |
agcatcactaatgatgggtgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggca |
246 |
Q |
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| T |
44635707 |
agcatcactaatgatgggtgtaggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggca |
44635608 |
T |
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| Q |
247 |
atag |
250 |
Q |
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|||| |
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| T |
44635607 |
atag |
44635604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 12281527 - 12281701
Alignment:
| Q |
76 |
tttgattactcaaaaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcag |
175 |
Q |
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| T |
12281527 |
tttgactactcaaaaagatcacaatggctaagagcagctgttttaggcgctaacgatggattagtctctacagcttcgctaatgatgggtgtcggtgcag |
12281626 |
T |
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| Q |
176 |
tgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaatag |
250 |
Q |
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| T |
12281627 |
tcaagcaagacatcaaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaatag |
12281701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 37758230 - 37758154
Alignment:
| Q |
97 |
caatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagc |
173 |
Q |
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| T |
37758230 |
caatggcttcgcgcagccgtattaggagctaatgatggattagtttctgttgcttcactaatgatgggtgtaggagc |
37758154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 13673 - 13514
Alignment:
| Q |
89 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
188 |
Q |
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| T |
13673 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
13574 |
T |
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| Q |
189 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaat |
248 |
Q |
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| T |
13573 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaat |
13514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 19353 - 19194
Alignment:
| Q |
89 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
188 |
Q |
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||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
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| T |
19353 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
19254 |
T |
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| Q |
189 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaat |
248 |
Q |
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| T |
19253 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaat |
19194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 1292921 - 1293080
Alignment:
| Q |
89 |
aaagatcacaatggctacgtgccgcggttttaggagctaatgatggattagtttcaacagcatcactaatgatgggtgtaggagcagtgaaacaagacat |
188 |
Q |
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||||| |||||||||| | || || |||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| || || || | | |||| | |
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| T |
1292921 |
aaagagcacaatggcttagggcagctgttttaggtgctaatgatggtttactctcaacagcatccctaatgatgggtgttggtgccgttacaaaagatgt |
1293020 |
T |
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| Q |
189 |
aaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaat |
248 |
Q |
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| T |
1293021 |
taagacaatgattctaactggaattgctggtcttgtagctggtgcatgtagcatggcaat |
1293080 |
T |
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