View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_low_13 (Length: 271)
Name: NF21355_low_13
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 40579605 - 40579355
Alignment:
| Q |
11 |
ttaattaaaatattttaactcacgttcacttgcttctaaatttctcaatatcttatctatccagaataattcaatattgtaagaataattttaattccta |
110 |
Q |
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| T |
40579605 |
ttaattaaaatattttaactcacgttcacttgcttctaaatttctcaatattgtatctatccagaataattcaatattgtaagaagaattttaattccta |
40579506 |
T |
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| Q |
111 |
tccttcaatattgtaagattttgttctgagagagcaacgtgattttcaataactgaagaagttcacatagtttctttctagcaactttcattttgtaagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40579505 |
tccttcaatattgtaagattttgttctgagagagcaacgtgattttcaataattgaagaagttcacatagtttctttctagcaactttcattttgtaagg |
40579406 |
T |
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| Q |
211 |
attactagtatagtattgagaacaactgacacactaaattatactcttcat |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40579405 |
attactagtatagtattgagaacaactgacacactaaattatactcttcat |
40579355 |
T |
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