View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_low_3 (Length: 441)
Name: NF21355_low_3
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 2239331 - 2238943
Alignment:
| Q |
18 |
gttaccctatcttttgtatactacatgcaatcattatatttgagtctaaagaaaaacaatattagaatttctctctatggaatttatttgaatttgagat |
117 |
Q |
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| T |
2239331 |
gttaccctatcttttgtatactacatgcaatcattatatttgagtctaaagaacaacaatattagaatttctctctatggaatttatttgaatttgagat |
2239232 |
T |
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| Q |
118 |
cataatatcataaataaatatttaatttcgtccatacacatgctttcttttttatgtgaacaatagattatctctgtccccgtaagcacaactcagttgg |
217 |
Q |
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| T |
2239231 |
cataatatcataaataaatatttaattttgtccatacacatgctttcttttttatgtgaacaatagattatctctgtccctgtaagcacaactcagttgg |
2239132 |
T |
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| Q |
218 |
tagggacattgcaatatgcagtgactagggtttgaacttgggattccccgcttattcacctctaggtgtgaaattctgatcagtgacttaccacaatttc |
317 |
Q |
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| T |
2239131 |
tagggacgttgcaatatgcagtgactagggtttgaacttgggattcaccacttattcacctctaggtatgaaattctgatcagtgacttaccacaa--tc |
2239034 |
T |
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| Q |
318 |
tacactaaatctataatatatttacaagtatgaatctctgaaataatctggaagggcataggtgttacaaagatcaaatggtcgttttcta |
408 |
Q |
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| T |
2239033 |
tacactaaatctataatatatttacaagtatgaatctctgaaataatctggaagggcataggtgttacagagatcaaatggttgttttcta |
2238943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 43189885 - 43189982
Alignment:
| Q |
202 |
agcacaactcagttggtagggacattgcaatatgcagtgactagggtttgaacttgggattccccgcttattcacctctaggtgtgaaattctgatca |
299 |
Q |
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| T |
43189885 |
agcataacttagttgatagggacattgcaatatacatggatcagggttcgaactcgtgattccccccttattcaccttaatgtgtgaaattatgatca |
43189982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 26250643 - 26250681
Alignment:
| Q |
192 |
tgtccccgtaagcacaactcagttggtagggacattgca |
230 |
Q |
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| T |
26250643 |
tgtccccgtgagcataactcagttggtagggacattgca |
26250681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 29169645 - 29169733
Alignment:
| Q |
192 |
tgtccccgtaagcacaactcagttggtagggacattgca--atatgcagtgactagggtttgaacttgggattccccgcttattcacct |
278 |
Q |
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| T |
29169645 |
tgtccccgtgggcatagctcagttggcagggacattgcattatatgcagggactggggttcgaaccccggattccccacttattcacct |
29169733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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