View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_low_5 (Length: 423)
Name: NF21355_low_5
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_low_5 |
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| [»] scaffold0061 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 751830 - 752225
Alignment:
| Q |
10 |
aagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751830 |
aagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcatt |
751929 |
T |
|
| Q |
110 |
caattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatctt |
209 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
751930 |
caattttcttgaagatgaacaattaaggttatttgctagcatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaagggagatctt |
752029 |
T |
|
| Q |
210 |
aggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
752030 |
aggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcccgcaaa |
752129 |
T |
|
| Q |
310 |
acaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
405 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752130 |
acaacatgtctcaagcacacatttatccaccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
752225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 7327603 - 7327227
Alignment:
| Q |
10 |
aagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcatt |
109 |
Q |
| |
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|||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||| ||||| | | ||||||||||| | |
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| T |
7327603 |
aagagtattttaaggaaaggatgaaaaaaattaaatttgagatttccaaagtgcgcaaagagaagataaagatgatgtatccatcctgggatgaatctta |
7327504 |
T |
|
| Q |
110 |
caattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatctt |
209 |
Q |
| |
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||||| |||| || |||||| | |||| ||||||||| || ||||||| ||||||||||| || |||| || |||| |||||||||||||||||||| |
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| T |
7327503 |
caattcacttggagtggaacaagtgaggtcatttgctagcatgttggattccaagcttgatgcttgtaatcaaaggatgcatatgctaaaaggagatctt |
7327404 |
T |
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| Q |
210 |
aggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaa |
309 |
Q |
| |
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| |||||| ||||||||| |||| || ||||| |||||| |||| || ||| |||| | |||||| ||||||||||||||||||||| |||||| |
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| T |
7327403 |
aaaggaaaaacaatagctcatgaatcacacaaggttgatatacttataggtaaccctaacttagcctcaaagccaagtagctacttcaatctcatgcaaa |
7327304 |
T |
|
| Q |
310 |
acaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccactt |
386 |
Q |
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||||||||| | ||||| | ||| ||||||||||||||||||| |||||||||| ||| ||||||||||||| |||| |
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| T |
7327303 |
acaacatgtttgaagcaaaaattcatcctccattgatgaatattaatgataaaaccccattagggttttggcaactt |
7327227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 745927 - 746118
Alignment:
| Q |
10 |
aagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcatt |
109 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||| ||||||||||||||| | |
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| T |
745927 |
aagaatattttaaggaaaggatgaaaaaagttgaattggagatttacaaagtgcgtaaagagaggttaaagatgaagtatccaacttgggatgaatctta |
746026 |
T |
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| Q |
110 |
caattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaag |
201 |
Q |
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||||| | ||| | |||||||||| |||| ||||| |||| | ||||||| ||||||||| ||||| ||| |||||||||||||| ||||| |
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| T |
746027 |
caattcttttggaaatgaacaattgaggtcatttgttaggtttttggattctaagcttgacgcatgtgatcaaaagatgaatatgcgaaaag |
746118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 405
Target Start/End: Original strand, 746137 - 746295
Alignment:
| Q |
247 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgat |
346 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| || ||| | ||||||||||| |||| | |||||| ||||||| | ||||| |||||||||| |
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| T |
746137 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagttaaaatttactctccattgat |
746236 |
T |
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| Q |
347 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
405 |
Q |
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|||||| ||||||||| || ||||||||||||||| || || ||||||||||||| |
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| T |
746237 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctc |
746295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 10 - 405
Target Start/End: Complemental strand, 51792693 - 51792298
Alignment:
| Q |
10 |
aagaatattttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagatgaagtatcaaacttgggatgaatcatt |
109 |
Q |
| |
|
|||| |||||||| ||||| || | |||| ||||||| |||||| |||||||||| ||||||||||| ||||||| ||||| ||||||| ||||||| || |
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| T |
51792693 |
aagagtattttaaggaaagaattagaaaacttgaattcgagattaccaaagtgcgtaaagagaagttaaagatgatgtatccaacttggaatgaatcttt |
51792594 |
T |
|
| Q |
110 |
caattttcttgcagatgaacaattaaggttatttgctaggatcttggattttaagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatctt |
209 |
Q |
| |
|
||||| ||||| || |||||||| | |||||||| || | |||| |||||||||||| || |||| ||||| | |||||||||||| ||||||| |
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| T |
51792593 |
caattctcttggagcggaacaattgatattatttgcaagcaaactggaagctaagcttgatgcttgtaatcaaaagaagcatatgctaaaagaagatctt |
51792494 |
T |
|
| Q |
210 |
aggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaa |
309 |
Q |
| |
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| ||||||| ||||||||| |||| || ||||| | ||||| |||| ||| |||||| |||| | ||||||||||| ||||||||||||| |||||| |
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| T |
51792493 |
aagggaaaaacaatagctcatgaatcacacaaggtagataaacttatcagtactccttccttgaccccaaatccaagttactacttcaatctcatgcaaa |
51792394 |
T |
|
| Q |
310 |
acaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
405 |
Q |
| |
|
| ||||||||||||||| | |||||||||| |||||||||| | |||||||||||| |||||||||||||||||| ||| ||||||||||||| |
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|
| T |
51792393 |
attccatgtctcaagcacaaacttatcctccaatgatgaatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctc |
51792298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 2450 - 2262
Alignment:
| Q |
161 |
taagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagt |
260 |
Q |
| |
|
|||||||||||| || | || |||||| ||||||||||||||| ||| || ||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |
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| T |
2450 |
taagcttgatgcttgtattcaaaagataaatatgctaaaaggatatcataagggaaaagcaatagctcatgaatcacacaaggttgataaacttattagt |
2351 |
T |
|
| Q |
261 |
tctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatat |
352 |
Q |
| |
|
|||| |||||| |||||||||||||| | ||||||| || ||||| ||||||||||||||| | ||||| ||||||||||| ||||| |
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| T |
2350 |
attcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa---aacatgtctcaagcagaaatttaacctccattgattaatat |
2262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 161 - 352
Target Start/End: Complemental strand, 7961 - 7773
Alignment:
| Q |
161 |
taagcttgatgcatgcaatctaaagatgaatatgctaaaaggagatcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagt |
260 |
Q |
| |
|
|||||||||||| || | || |||||| ||||||||||||||| ||| || ||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |
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| T |
7961 |
taagcttgatgcttgtattcaaaagataaatatgctaaaaggatatcataagggaaaagcaatagctcatgaatcacacaaggttgataaacttattagt |
7862 |
T |
|
| Q |
261 |
tctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatat |
352 |
Q |
| |
|
|||| |||||| |||||||||||||| | ||||||| || ||||| ||||||||||||||| | ||||| ||||||||||| ||||| |
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|
| T |
7861 |
attcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa---aacatgtctcaagcagaaatttaacctccattgattaatat |
7773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 2595 - 2531
Alignment:
| Q |
18 |
tttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagat |
82 |
Q |
| |
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||||| |||| |||| |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| |
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|
| T |
2595 |
tttaaggaaaagatggaaaaagttgaatttaagatttccagagtgcagaaagagatgttgaagat |
2531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8106 - 8042
Alignment:
| Q |
18 |
tttaaagaaaggatgaaaaaagttgaatttgagatttccaaagtgcgcaaagagaagtttaagat |
82 |
Q |
| |
|
||||| |||| |||| |||||||||||||| ||||||||| ||||| ||||||| ||| ||||| |
|
|
| T |
8106 |
tttaaggaaaagatggaaaaagttgaatttaagatttccagagtgcagaaagagatgttgaagat |
8042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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