View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21355_low_8 (Length: 345)

Name: NF21355_low_8
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21355_low_8
NF21355_low_8
[»] chr5 (6 HSPs)
chr5 (129-331)||(40579852-40580054)
chr5 (1-91)||(40579672-40579762)
chr5 (10-92)||(12974251-12974333)
chr5 (9-64)||(38274991-38275046)
chr5 (281-331)||(41161682-41161732)
chr5 (19-83)||(17537469-17537537)
[»] chr1 (6 HSPs)
chr1 (10-93)||(25948200-25948283)
chr1 (9-91)||(47490278-47490360)
chr1 (10-91)||(5298751-5298832)
chr1 (19-83)||(2736182-2736247)
chr1 (19-83)||(39959850-39959915)
chr1 (19-83)||(1076197-1076262)
[»] chr8 (1 HSPs)
chr8 (9-91)||(33802583-33802665)
[»] chr7 (10 HSPs)
chr7 (11-93)||(42617401-42617483)
chr7 (19-83)||(28545504-28545569)
chr7 (19-83)||(28549919-28549984)
chr7 (19-83)||(28556087-28556152)
chr7 (19-83)||(47958511-47958576)
chr7 (19-83)||(48253863-48253928)
chr7 (19-83)||(24142897-24142962)
chr7 (30-93)||(36977669-36977732)
chr7 (19-82)||(2415883-2415947)
chr7 (38-83)||(46961385-46961430)
[»] chr3 (6 HSPs)
chr3 (10-91)||(42085055-42085136)
chr3 (19-83)||(21127742-21127807)
chr3 (19-83)||(43291871-43291936)
chr3 (11-93)||(34935729-34935811)
chr3 (286-328)||(21885377-21885419)
chr3 (129-181)||(19851584-19851636)
[»] scaffold0648 (1 HSPs)
scaffold0648 (9-93)||(7743-7827)
[»] chr4 (7 HSPs)
chr4 (9-93)||(43930108-43930192)
chr4 (19-83)||(33075804-33075869)
chr4 (19-82)||(55899070-55899134)
chr4 (19-83)||(228867-228935)
chr4 (19-83)||(240412-240480)
chr4 (29-79)||(42678844-42678894)
chr4 (19-83)||(47819298-47819366)
[»] chr2 (1 HSPs)
chr2 (19-83)||(36011894-36011959)
[»] chr6 (1 HSPs)
chr6 (19-82)||(30809870-30809934)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 129 - 331
Target Start/End: Original strand, 40579852 - 40580054
Alignment:
Q  129 aatatagcaagtaccttagtggtgtacatgattgtcctatttatagagacaatcacaccaattgagaaataaactaattaggtagctcaaccctttatta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40579852 aatatagcaagtaccttagtggtgtacatgattgtcctatttatagagacaatcacaccaattgagaaataaactaattaggtagctcatccctttatta 40579951  T
Q  229 gtgttctatttaatgatttggaaatggacaaattggattacctgcactcaaatttttgtagaaactttcagcaatgagtttgtatctcaggcatgtgatt 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40579952 gtgttctatttaatgatttggaaatggacaaattggattacctgcactcaaatttttgtagaaactttcagtaatgagtttgtatctcaggcatgtgatt 40580051  T
Q  329 tct 331  Q
    |||    
T  40580052 tct 40580054  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 40579672 - 40579762
Alignment:
Q  1 taacatagcaagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40579672 taacatagcaagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 40579762  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 12974251 - 12974333
Alignment:
Q  10 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12974251 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtcat 12974333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 38275046 - 38274991
Alignment:
Q  9 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagg 64  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38275046 caagacagtttggccgagtggtctacggcgccagatttaggctctggtccgaaagg 38274991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 41161682 - 41161732
Alignment:
Q  281 tttttgtagaaactttcagcaatgagtttgtatctcaggcatgtgatttct 331  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  41161682 tttttgtagaaacattcagcaatgagtttgtatctcaggcgtttgatttct 41161732  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 17537469 - 17537537
Alignment:
Q  19 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 83  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  17537469 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 17537537  T

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Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 25948200 - 25948283
Alignment:
Q  10 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25948200 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtcatt 25948283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 47490360 - 47490278
Alignment:
Q  9 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47490360 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 47490278  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 5298751 - 5298832
Alignment:
Q  10 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 91  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5298751 aagacggtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagccgtca 5298832  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 2736182 - 2736247
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2736182 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 2736247  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 39959850 - 39959915
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  39959850 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 39959915  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 1076197 - 1076262
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||    
T  1076197 tggccgagttggtctaaggcgtcagattaaggttctggtccgaaagggcgtgggttcaaatcccac 1076262  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 33802665 - 33802583
Alignment:
Q  9 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33802665 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 33802583  T

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Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 42617483 - 42617401
Alignment:
Q  11 agacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42617483 agacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtcatt 42617401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 28545504 - 28545569
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28545504 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 28545569  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 28549919 - 28549984
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28549919 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 28549984  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 28556087 - 28556152
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28556087 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 28556152  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 47958576 - 47958511
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  47958576 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 47958511  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 48253863 - 48253928
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48253863 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 48253928  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 24142962 - 24142897
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||    
T  24142962 tggccgagttggtctaaggcgccagattaaggttctggtccgatagggtgtgggttcaaatcccac 24142897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 36977732 - 36977669
Alignment:
Q  30 tctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 93  Q
    |||||||||  ||||||||||||||| | |||||||| |||||||||||||||| | |||||||    
T  36977732 tctaaggcgttagatttaggctctggcctgaaagggcatgggttcaaatcccactgtagtcatt 36977669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 2415883 - 2415947
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatccca 82  Q
    ||||||||| ||||||||||||||| || |||  ||||||||||||||| ||||||| |||||||    
T  2415883 tggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 2415947  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 46961385 - 46961430
Alignment:
Q  38 gccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    |||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  46961385 gccagattaaggttctggtctgaaaaggcgtgggttcaaatcccac 46961430  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 42085136 - 42085055
Alignment:
Q  10 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42085136 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 42085055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 21127807 - 21127742
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  21127807 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 21127742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 43291936 - 43291871
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43291936 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 43291871  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 34935729 - 34935811
Alignment:
Q  11 agacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 93  Q
    |||| |||||||| |||||||||||||  ||||||||||||| |||  ||||||||||||||||||||| |||||| ||||||    
T  34935729 agacggtttggccaagtggtctaaggcatcagatttaggctccggtttgaaagggcgtgggttcaaatctcacagccgtcatt 34935811  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 21885419 - 21885377
Alignment:
Q  286 gtagaaactttcagcaatgagtttgtatctcaggcatgtgatt 328  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  21885419 gtagaaactttcagcaatgaatttgtatctcaagcatgggatt 21885377  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 19851584 - 19851636
Alignment:
Q  129 aatatagcaagtaccttagtggtgtacatgattgtcctatttatagagacaat 181  Q
    |||||||||||| ||| |||||| | ||| ||||||||||||||| |||||||    
T  19851584 aatatagcaagtgcctaagtggtttgcataattgtcctatttataaagacaat 19851636  T

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Target: scaffold0648 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 7827 - 7743
Alignment:
Q  9 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 93  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7827 caagacggtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagccgtcatt 7743  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 43930192 - 43930108
Alignment:
Q  9 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 93  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43930192 caagacggtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagccgtcatt 43930108  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 33075804 - 33075869
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  33075804 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 33075869  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 55899134 - 55899070
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatccca 82  Q
    ||||||||| ||||||||||||||| || |||  ||||||||||||||| ||||||| |||||||    
T  55899134 tggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 55899070  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 228867 - 228935
Alignment:
Q  19 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 83  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  228867 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 228935  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 240412 - 240480
Alignment:
Q  19 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 83  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  240412 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 240480  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 42678894 - 42678844
Alignment:
Q  29 gtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatc 79  Q
    ||||||||||||||||| ||| ||| |||||||||||||||  ||||||||    
T  42678894 gtctaaggcgccagattaaggttctcgtccgaaagggcgtgaattcaaatc 42678844  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 47819366 - 47819298
Alignment:
Q  19 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 83  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  47819366 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 47819298  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 36011894 - 36011959
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 83  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  36011894 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 36011959  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 30809934 - 30809870
Alignment:
Q  19 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatccca 82  Q
    ||||||||| ||||||||||||||| || |||  ||||||||||||||| ||||||| |||||||    
T  30809934 tggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 30809870  T

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