View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21355_low_9 (Length: 315)
Name: NF21355_low_9
Description: NF21355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21355_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 64 - 281
Target Start/End: Original strand, 34302115 - 34302332
Alignment:
| Q |
64 |
ttcacgtcatctttaagtaaattgatgctcatctttcttaacgtctccccacgaaggaggaagtaagtaatcacactaagctcatttctagttcccttga |
163 |
Q |
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| T |
34302115 |
ttcacgtcacctttaagtaaattgatactcatctttcttaacgtctccccacgaaggaggaagtaagtaatcacacaaagctcatttttagttctcttga |
34302214 |
T |
|
| Q |
164 |
agcccttaatctcaaccttctttagatgtgatttcacacatttgtaagcttctatggtatcaatccaatatttctctgggataatagggaacactggttc |
263 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| |
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| T |
34302215 |
agcccgtaatctcgaccttctttagatgtgatttcacacatttgtaagcttctatagtatcaatccaatatttttctggaataatggggaacaccggttc |
34302314 |
T |
|
| Q |
264 |
aaaatactgcaatataaa |
281 |
Q |
| |
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|||| |||||||||||| |
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| T |
34302315 |
aaaaatctgcaatataaa |
34302332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 158 - 308
Target Start/End: Original strand, 34296717 - 34296867
Alignment:
| Q |
158 |
ccttgaagcccttaatctcaaccttctttagatgtgatttcacacatttgtaagcttctatggtatcaatccaatatttctctgggataatagggaacac |
257 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34296717 |
ccttgaagcccttaatctcaaccttttttagatgtgatttcacacatttgtaagcttctatagtatcaatccaatatttctctgggataatagggaacac |
34296816 |
T |
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| Q |
258 |
tggttcaaaatactgcaatataaacaaaaataaagttcaatgtcttaattc |
308 |
Q |
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| T |
34296817 |
tggttcaaaaaactgcaatataaacaaaaataaagttcaatgtcttaattc |
34296867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 34281047 - 34281268
Alignment:
| Q |
75 |
tttaagtaaattgatgctcatctttcttaacgtctccccacgaaggaggaagtaagtaatcacactaagctcatttctagttcccttgaagcccttaatc |
174 |
Q |
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|||||||||||| ||||||||||| ||||| |||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
34281047 |
tttaagtaaattaatgctcatcttccttaaggtctcctcacgaatgaggaagtaagtaatc-cattaagctcatttctagttcccttgaagcccgtaatc |
34281145 |
T |
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| Q |
175 |
tcaaccttctttagatgtgatttcacacatttgtaagcttctatgg---tatcaatccaatatttctctgggataatagggaacactggttcaaaatact |
271 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||| |||||||||| || |
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| T |
34281146 |
tcgaccttctttagatgtgatttcacacatttgtaagcttctatagtattatcaatccaatatttttctggaataa----------tggttcaaaaatct |
34281235 |
T |
|
| Q |
272 |
gcaatataaacaaaaataaagttcaatgtctta |
304 |
Q |
| |
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||||||||||||| |||| ||| |||||||||| |
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| T |
34281236 |
gcaatataaacaacaatacagtccaatgtctta |
34281268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 34289718 - 34289826
Alignment:
| Q |
54 |
agcctcttctttcacgtcatctttaagtaaattgatgctcatctttcttaacgtctccccacgaaggaggaagtaagtaatcacactaagctcatttcta |
153 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34289718 |
agcctcttctttcatgtcatctttaagtaaattgatgctcatctttcttaaggcctccccacgaaggaggaagtaagtaatcacactaagctcatttcta |
34289817 |
T |
|
| Q |
154 |
gttcccttg |
162 |
Q |
| |
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||||||||| |
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| T |
34289818 |
gttcccttg |
34289826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 34289648 - 34289687
Alignment:
| Q |
17 |
aattagttgaagcttttggaattgtcagcaaagatctagc |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34289648 |
aattagttgaagcttttggaattgtcagcaaagatctagc |
34289687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 34302035 - 34302074
Alignment:
| Q |
17 |
aattagttgaagcttttggaattgtcagcaaagatctagc |
56 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
34302035 |
aattagttgaagcttttggaattgtcagtaaagatctagc |
34302074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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