View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_high_11 (Length: 311)
Name: NF21356_high_11
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 21149309 - 21149023
Alignment:
| Q |
10 |
aagaatatcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgt |
109 |
Q |
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| T |
21149309 |
aagattatcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgt |
21149210 |
T |
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| Q |
110 |
atcatcttaaccggattctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaaatttgttggattgtgtcgatgatgtg |
209 |
Q |
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| T |
21149209 |
atcatcttaaccggattctttgggaataagttaaggcttctaatgagcttttctgctcgttgatttggtgaaaaacttgttggattatgtcgatgatgtg |
21149110 |
T |
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| Q |
210 |
tgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttgctgt |
296 |
Q |
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| T |
21149109 |
tgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttgctgt |
21149023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 21143491 - 21143210
Alignment:
| Q |
17 |
tcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacaga-atgaccatgtatcatc |
115 |
Q |
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| T |
21143491 |
tcaatagaaggaccattagaatcactaaaaaacgagaacttcttctcgacgagttttccagggacaaaatgatcaat-agagtgatcaccatgaattata |
21143393 |
T |
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| Q |
116 |
ttaaccggattctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaaatttgttg--gattg-----tgtcgatgatgt |
208 |
Q |
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| T |
21143392 |
ttaactggatcctttggcaataagttaaagctttttataagcttttcagctcgttggtttggtgaaaattttggtgttgatgaaaaactat-gatgatgt |
21143294 |
T |
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| Q |
209 |
gtgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggtttctgagaatcccatgttg |
292 |
Q |
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| T |
21143293 |
gtgatgcgagaagttgcgtatgaagaagaaaacaaaacgaacaataacaaaagagatagagaggttttagagaatcccatgttg |
21143210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 21123568 - 21123402
Alignment:
| Q |
17 |
tcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaaggacagaatgaccatgtatcatct |
116 |
Q |
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| T |
21123568 |
tcaatagaaggaccaccagaatcaccgaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaagagaatgatcaccatgaattacat |
21123469 |
T |
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| Q |
117 |
taaccggattctttgggaataagttaaggcttctaatgagtttttctgctcgttgatttggtgaaaa |
183 |
Q |
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| T |
21123468 |
taactgattgctttgggaataagttgaagcttcttataagcttttcagcttgttgatttggtgaaaa |
21123402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 21113612 - 21113542
Alignment:
| Q |
205 |
atgtgtgatgcgtgaagttgcatacaaggaagaaaataaaatgaacaatagcaaaacagacagggaggttt |
275 |
Q |
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| T |
21113612 |
atgtgtggtgcgagaagttgcatatgaggaagaaaataaaatgaacaacaacaaaagagacatagaggttt |
21113542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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