View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_high_18 (Length: 261)
Name: NF21356_high_18
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9909351 - 9909595
Alignment:
| Q |
1 |
attagcaaaccaatgattatatactgtgatgaatgttgaaatagggtacgtgaccaatcaatgactaagactatccccaacacacacgtttccatgaatt |
100 |
Q |
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| T |
9909351 |
attagcaaaccaatgattatatactgtgatgaatgttgaaatagggtacgtgaccaatcaatgactaagactatccccaacacacacgtttccataaatt |
9909450 |
T |
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| Q |
101 |
tggtagcaatgtgacatcgt-----aacccatgtgtatgatcctctcc-nnnnnnnnnnnnnnnncatgtgtatgattgtttaaaatcaaagtaagtgca |
194 |
Q |
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| T |
9909451 |
tggtagcaatgtgacatcgtaacccaacccatgtgtatgatcctctccaaaaaaaacaaaaaaaacatgtgtatgattgtttaaaatgaaagtaagtgca |
9909550 |
T |
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| Q |
195 |
tattcctacgtaatattaaattaaaatcaatacgacattggtgaa |
239 |
Q |
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| T |
9909551 |
tattcctacgtaatattaaattaaaatcaatacgacattggtgaa |
9909595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 9862990 - 9862931
Alignment:
| Q |
84 |
acacgtttccatgaatttggtagcaatgtgacatcgtaacccatgtgtatgatcctctcc |
143 |
Q |
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|||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9862990 |
acacgtttccttaaatttggtagcaatgtgacatcgtaacacatgtgtatgatcctctcc |
9862931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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