View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21356_high_3 (Length: 462)
Name: NF21356_high_3
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 11715521 - 11715120
Alignment:
| Q |
1 |
atgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaaacaaataggactgatactgtattatgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11715521 |
atgtagagaaagtgcaagaatcaagaatgaaatccaagaaagtgct-----ggaatggaattcactagaaacaaataggacagataccgtattatgaata |
11715427 |
T |
|
| Q |
101 |
tgcaaattagaaaaattgagagctcaaatgcatgctaggagtaaagtgattttccctacttcattcaattattta-tacatgtaggtagtcaccgtcata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| || || || || ||||||||| ||||||| |
|
|
| T |
11715426 |
tgcaaattagaaaaattgagagctcaaatgcatgataggagtaaagtgatttttcttacttcattcaatgatctagtaaat--aggtagtcatcgtcata |
11715329 |
T |
|
| Q |
200 |
agctaagctatgtctgttataggatagagtgacttacataacaagtaactgaatctaactaactttctggaaaagtataactgcttctagttgtctttat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
11715328 |
agctaagctatgtctgttataggatagagtgacttacataacaagtaactaaatctaactaactttttggaaaa-tataactgcttctagttgtctttat |
11715230 |
T |
|
| Q |
300 |
gagtctcatcaatttgtgaaattgagttatcttcacttgaatctagcttatgtaatattggtaaaatactcccnnnnnnntaagtaggacgtaagttaac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
11715229 |
aagtctcatcaatttgtgaaattgagttatcttcacttgaatctagcttatgtaatattggtaaaatactcccaaaaaaataagtagg-tgtaagttaac |
11715131 |
T |
|
| Q |
400 |
aacttcacatt |
410 |
Q |
| |
|
||||||||||| |
|
|
| T |
11715130 |
aacttcacatt |
11715120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 11685552 - 11685956
Alignment:
| Q |
1 |
atgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaaacaaataggactgatactgtattatgaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11685552 |
atgtagagaaagtgcaagaatcaagaatgaaatccaagaaagtgct-----ggaatggaattcactagaaacaaataggacagataccgtattatgaata |
11685646 |
T |
|
| Q |
101 |
tgcaaattagaaaaattgagagctcaaatgcatgctaggagtaaagtgattttccctacttcattcaattattta-tacatgtaggtagtcaccgtcata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || || || || ||||||||| ||||||| |
|
|
| T |
11685647 |
tgcaaattagaaaaattgagagctcaaatgcatgataggagtaaagtgattttccttacttcattcaatgatctagtaaat--aggtagtcatcgtcata |
11685744 |
T |
|
| Q |
200 |
agctaagctatgtctgttataggatagagtgacttacataacaagtaactgaatctaactaactttctggaaaagtataactgcttctagttgtc--ttt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
11685745 |
agctaagctatgtctgttataggatagagtgacttacataacaagtaactaaatctaactaactttttggaaaagtataatcgcttctagttgtcttttt |
11685844 |
T |
|
| Q |
298 |
atgagtctcatcaatttgtgaaattgagttatcttcacttgaatctagcttatgtaatattggtaaaatactcccnnnnnnntaagtaggacgtaagtta |
397 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
11685845 |
ataagtctcatcaatttgtgaaattgagttatcttcacttgaatctagcttatgtaatattggtaaaatactcccaaaaaaataagtagg-tgtaagtta |
11685943 |
T |
|
| Q |
398 |
acaacttcacatt |
410 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11685944 |
acaacttcacatt |
11685956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27653262 - 27653389
Alignment:
| Q |
1 |
atgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaa-acaaataggactgatactgtattatgaat |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
27653262 |
atgtagagatagtgcaagaatcaagaataaaaccctagaaagtgcaggaatggaatggaattcacaagaatgaaaatgtgactgatactgtattatgaat |
27653361 |
T |
|
| Q |
100 |
atgcaaattagaaaaattgagagctcaaa |
128 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
27653362 |
atgcaaattag-aaaattgagagctcaaa |
27653389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 444
Target Start/End: Complemental strand, 11721151 - 11721115
Alignment:
| Q |
408 |
attaatcaatgaagattatttagtgaaggagtagccg |
444 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
11721151 |
attaatcaattaagattatttagtgaaggactagccg |
11721115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 27653414 - 27653446
Alignment:
| Q |
339 |
aatctagcttatgtaatattggtaaaatactcc |
371 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
27653414 |
aatctagcttatgtaatattgctaaaatactcc |
27653446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University