View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_high_6 (Length: 398)
Name: NF21356_high_6
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 240 - 381
Target Start/End: Original strand, 41953040 - 41953179
Alignment:
| Q |
240 |
gacttttctagtttagcaagatacccgacccaattataataaggatgtgagataacataatgtctataagcatctagaacatttatcatgataaataaga |
339 |
Q |
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| T |
41953040 |
gacttttctagtttagcaagatacccgacccaatta--ataaggatgtgagataacataatgtctataagcatctagaacatttatcatgataaataaga |
41953137 |
T |
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| Q |
340 |
ttcacaaattaattagtccactatcaatcaacatgcatgttt |
381 |
Q |
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| T |
41953138 |
ttcacaaattaattagtccactatcaatcaacatgcatgttt |
41953179 |
T |
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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 41952801 - 41952990
Alignment:
| Q |
1 |
tggatgattgaacttgaagatatagatgagccggatcaatatcacgccatgtatacttttgcagctgaagccannnnnnnnnnnnnnnnnnnnnnaaata |
100 |
Q |
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| T |
41952801 |
tggatgattgaacttgaagatatagatgagccggatcaatatcacgccatgtatacttttgcagctgaagccatatttattattattattataataaata |
41952900 |
T |
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| Q |
101 |
aggcgattaaggcttctagctagttatagttttgtggaaggaatgacaatttctccctcctataaataggactgaccaatgcactgtgga |
190 |
Q |
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| T |
41952901 |
aggcgattaaagcttctagctagttatagttttgtggaaggaatgacaatttctccctcctataaataggactgaccaatgcactgtgga |
41952990 |
T |
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