View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_high_8 (Length: 356)
Name: NF21356_high_8
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 4296277 - 4296140
Alignment:
| Q |
14 |
gagctggagctacattctgatctgtggtcttgtggtgattgtggtgccaaggagagccatgacatgaattcattaattggcttattatggttttttgggt |
113 |
Q |
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| T |
4296277 |
gagctggagctacattctgatctgtggtcttgtggtgattgtggtgccaaggagagccatgacatgaattcattaattggcttattatggtttttttggt |
4296178 |
T |
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| Q |
114 |
tacttgtttgatatggtgccctagcagcaattctgtag |
151 |
Q |
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| T |
4296177 |
tacttgtttgatatggtgccctagcagcaattctgtag |
4296140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 212 - 338
Target Start/End: Complemental strand, 4296078 - 4295952
Alignment:
| Q |
212 |
gtttatcaatttgccacgactcaaactatttcgaaacaaaaagtaaggggataattttcttggattctgattacatgcatttcctctgtgcagagaaatt |
311 |
Q |
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| T |
4296078 |
gtttatcaatttgccacgactcaaactatttcgaaacaaaaagtaaggggataattttcttggattctgattacatgcatttcctctgtgcagagaaatt |
4295979 |
T |
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| Q |
312 |
attgatttcaattatctgacaacaaat |
338 |
Q |
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| T |
4295978 |
attgatttcaattatctgactacaaat |
4295952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 4301727 - 4301628
Alignment:
| Q |
52 |
ttgtggtgccaaggagagccatgacatgaattcattaattggcttattatggttttttgggttacttgtttgatatggtgccctagcagcaattctgtag |
151 |
Q |
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| T |
4301727 |
ttgtggtgccaaggagagccatgacatgaattcgttaattggcttattaaggtttgttgggttacttgtttgatatggtgcctttgcagcaattctgtag |
4301628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 4307472 - 4307367
Alignment:
| Q |
43 |
ttgtggtgattgtggtgccaaggagagccatgacatgaattcattaattggcttattatggttttttgggttacttgtttgatatggtgccctagcagca |
142 |
Q |
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| T |
4307472 |
ttgtggtgattgtggtgccaaagagagccatgtcatagattcatcaattggtttattaatggttgttggattgcttgtttgatatggtgccttggcagca |
4307373 |
T |
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| Q |
143 |
attctg |
148 |
Q |
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|||||| |
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| T |
4307372 |
attctg |
4307367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 4312024 - 4311923
Alignment:
| Q |
50 |
gattgtggtgccaaggagagccatgacatgaattcattaattggcttattatgg---ttttttgggttacttgtttgatatggtgccctagcagcaattc |
146 |
Q |
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| T |
4312024 |
gattgtggtgccaaggatagccatgacatggattcatcaattggcttattaaggaatgctgctggattacttgtttgataaggtgcctttgcagcaattc |
4311925 |
T |
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| Q |
147 |
tg |
148 |
Q |
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|| |
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| T |
4311924 |
tg |
4311923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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