View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_low_11 (Length: 320)
Name: NF21356_low_11
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 9967193 - 9967374
Alignment:
| Q |
127 |
tctaattttgcaacactaacgtacgaatgtgatttttctttgcaatttgtatctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtg |
226 |
Q |
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| T |
9967193 |
tctaattttgcaacactaacgtacgaatgtgatttttctttgcaatttgtatctaatgttgcataactgaaattaaacaactcattaaaaagcgcacgtg |
9967292 |
T |
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| Q |
227 |
ataacttgtatagctaaaacacatgtgaatataactaagatatcacatgcaattttttatgagtcattttatcttagccctttg |
310 |
Q |
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| T |
9967293 |
ataacttgtatagctaaaacacatgtgaatataactaagatatcacatgcaattttt--tgagtcattttatcttagccctttg |
9967374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 285
Target Start/End: Complemental strand, 9960021 - 9959917
Alignment:
| Q |
177 |
atctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttgtatagctaaaacacatgtgaatataactaagatatcacatgc |
276 |
Q |
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| T |
9960021 |
atctaatgttgcataattgaaattaaacaactcattaaaaagcgcacgtgataacttgcataactaaaacgcgtgtgaat----ttaagatatcacgtgc |
9959926 |
T |
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| Q |
277 |
aatttttta |
285 |
Q |
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| T |
9959925 |
aatttttta |
9959917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 9974093 - 9974176
Alignment:
| Q |
177 |
atctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttgtatagctaaaacacatgtgaatataa |
260 |
Q |
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| T |
9974093 |
atctaatgttgcataactgaaattaaacgactcattaaaaagcgcacgtgataacttgcataactaaaacgcgtgtgaatataa |
9974176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 9868739 - 9868821
Alignment:
| Q |
152 |
aatgtgatttttctttgcaatttgtatctaatgttgcataactgaagttaaacaactcattaaaaagcgcacgtgataacttg |
234 |
Q |
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| T |
9868739 |
aatgtgatttttattggcaatttgtatatgatgttgcagaactgaaattaaatgactcattaaaaagtacacgtgataacttg |
9868821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 9983182 - 9983232
Alignment:
| Q |
62 |
atggcaaaggttctcaatggtgggactgccattccaatatcaagtgtgaaa |
112 |
Q |
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| T |
9983182 |
atggcaaaggtgctcaatggtgggattgccattccaatatcaagtgtgaaa |
9983232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 9983126 - 9983167
Alignment:
| Q |
24 |
atggatccgttttatagagataagtggtcttgttgtttatgg |
65 |
Q |
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| T |
9983126 |
atggatccgttttatagagataagtggtcttattgtttatgg |
9983167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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