View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_low_14 (Length: 301)
Name: NF21356_low_14
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_low_14 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 7619203 - 7618919
Alignment:
| Q |
1 |
agaagcaaaggatggagttagaacaagataatccttctagaataatgatatggctatgatatcacaaataaaatcaaagttcataaaggaagaaattgtt |
100 |
Q |
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| T |
7619203 |
agaaacaaaagatggagttagaacaaaataatccttctagaataatgatatggctatgatatcacaaataaaatcaaagttcataaaggaagaaattgtt |
7619104 |
T |
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| Q |
101 |
gacaacttatgggtagaagccatgaaagaggaaatatcacattttgagataaatgaatgtgcacactcgtaccgactccttaaagtcggtctattattca |
200 |
Q |
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| T |
7619103 |
gacaacttatgggcagaagccatgaaagaagaactatcacagtttgagataaatgaatatgcacactcgtaccgactcctcaaagtcggtctattattca |
7619004 |
T |
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| Q |
201 |
caccatatgggtcttcagaaataaaatacacaaggatagtgaagtaatttgttacaaagccaaattaattacgcaaggatataat |
285 |
Q |
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| T |
7619003 |
caccacatgggtcttcagaaataaaatacacgaagatagtgaagtaatttgttacaaagtcaaattagttacacaaggatataat |
7618919 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 157
Target Start/End: Original strand, 11377874 - 11377987
Alignment:
| Q |
44 |
aatgatatggctatgatatcacaaataaaatcaaagttcataaaggaagaaattgttgacaacttatgggtagaagccatgaaagaggaaatatcacatt |
143 |
Q |
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| T |
11377874 |
aatgatatggcaatgatctcacaaatagaaccaaaatccataaaagaagcaatcattgataactcatggatagaagctatggaagaagaattatcacaat |
11377973 |
T |
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| Q |
144 |
ttgagataaatgaa |
157 |
Q |
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| T |
11377974 |
ttgataaaaatgaa |
11377987 |
T |
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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 167352 - 167468
Alignment:
| Q |
41 |
aataatgatatggctatgatatcacaaataaaatcaaagttcataaaggaagaaattgttgacaacttatgggtagaagccatgaaagaggaaatatcac |
140 |
Q |
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|||||||||||||| ||||| ||||||||| || |||| | |||||| |||| || |||| |||| ||| ||||||| ||| |||| ||| |||||| |
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| T |
167352 |
aataatgatatggcaatgatctcacaaatagaaccaaaatccataaaagaagcaaccattgataactcgtggatagaagctatggaagaagaattatcac |
167451 |
T |
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| Q |
141 |
attttgagataaatgaa |
157 |
Q |
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| T |
167452 |
aatttgataaaaatgaa |
167468 |
T |
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