View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_low_16 (Length: 298)
Name: NF21356_low_16
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 32835378 - 32835111
Alignment:
| Q |
13 |
aatatatgtataataatcacaagcatcatagtcatagatattaatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtat----a |
108 |
Q |
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| T |
32835378 |
aatatatgtataataatcacaagcatcatagtcatagatgttaatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtatgtata |
32835279 |
T |
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| Q |
109 |
accacaagcatcattgtcaaaacgacaaacacacgcagaaatagggacaactatatttatgccaccttgtttatttttactcaattattaatgaaatgta |
208 |
Q |
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| T |
32835278 |
accacaagcatcattgtcaaaacgacaaacacacgcagaaatagggacaactatatttatgccaccttgtttgtttttactcaattattaatgaaatgta |
32835179 |
T |
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| Q |
209 |
cgagtatctgttgattgaagttaattttttaatgctatttttatttatagtatatccaaaaatatcataaat |
280 |
Q |
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| T |
32835178 |
cgagtatctgttgattgaagttaat-ttttaatgctatttttattta---tatatccaaaaatataataaat |
32835111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 32835416 - 32835345
Alignment:
| Q |
55 |
aatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtataaccacaagcatcattgtca |
127 |
Q |
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| T |
32835416 |
aatcaaattaaattgttcactaatgtcacttgcctaataatatatgtat-aataatcacaagcatcatagtca |
32835345 |
T |
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