View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21356_low_22 (Length: 242)

Name: NF21356_low_22
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21356_low_22
NF21356_low_22
[»] chr6 (7 HSPs)
chr6 (18-228)||(12631395-12631606)
chr6 (37-74)||(10452455-10452492)
chr6 (7-81)||(1810364-1810439)
chr6 (38-81)||(31668781-31668824)
chr6 (39-81)||(31461609-31461651)
chr6 (39-80)||(4247731-4247772)
chr6 (41-81)||(29249405-29249445)
[»] chr5 (10 HSPs)
chr5 (37-81)||(29588811-29588855)
chr5 (37-79)||(7096222-7096264)
chr5 (37-79)||(13224362-13224404)
chr5 (40-81)||(18704133-18704174)
chr5 (38-74)||(1773521-1773557)
chr5 (37-81)||(11684354-11684398)
chr5 (37-73)||(12407756-12407792)
chr5 (37-73)||(12460095-12460131)
chr5 (37-81)||(20982230-20982274)
chr5 (37-81)||(26516229-26516273)
[»] scaffold0590 (1 HSPs)
scaffold0590 (37-81)||(1169-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (37-81)||(2762-2806)
[»] chr8 (8 HSPs)
chr8 (37-81)||(35869768-35869812)
chr8 (37-81)||(42597332-42597376)
chr8 (18-73)||(44617862-44617918)
chr8 (37-79)||(14949821-14949863)
chr8 (44-81)||(8536150-8536187)
chr8 (37-82)||(10114420-10114465)
chr8 (37-74)||(26215434-26215471)
chr8 (37-81)||(14482133-14482177)
[»] chr7 (11 HSPs)
chr7 (37-81)||(46213734-46213778)
chr7 (37-80)||(33894555-33894598)
chr7 (37-78)||(1432062-1432103)
chr7 (36-73)||(35808998-35809035)
chr7 (37-81)||(24973875-24973919)
chr7 (37-73)||(30496643-30496679)
chr7 (37-73)||(35007543-35007579)
chr7 (24-87)||(37832218-37832284)
chr7 (38-74)||(43328187-43328223)
chr7 (37-81)||(47134838-47134882)
chr7 (37-73)||(49060479-49060515)
[»] chr4 (10 HSPs)
chr4 (37-81)||(24443969-24444013)
chr4 (38-81)||(47970249-47970292)
chr4 (39-81)||(4191670-4191712)
chr4 (37-87)||(6364074-6364124)
chr4 (37-87)||(23503484-23503534)
chr4 (37-74)||(25487640-25487677)
chr4 (37-73)||(17125725-17125761)
chr4 (37-73)||(24936249-24936285)
chr4 (37-73)||(51044554-51044590)
chr4 (38-74)||(55994283-55994319)
[»] chr1 (9 HSPs)
chr1 (37-81)||(23895267-23895311)
chr1 (37-74)||(172279-172316)
chr1 (41-74)||(2462905-2462938)
chr1 (40-81)||(13037795-13037836)
chr1 (37-74)||(50319230-50319267)
chr1 (37-85)||(4549793-4549841)
chr1 (24-87)||(37593748-37593814)
chr1 (37-81)||(42397694-42397738)
chr1 (37-81)||(44375432-44375476)
[»] chr2 (9 HSPs)
chr2 (37-74)||(5133710-5133747)
chr2 (39-80)||(41033047-41033088)
chr2 (37-81)||(3673738-3673782)
chr2 (37-81)||(5903232-5903276)
chr2 (44-88)||(15288708-15288752)
chr2 (37-81)||(25609727-25609771)
chr2 (37-81)||(34054996-34055040)
chr2 (37-73)||(35755597-35755633)
chr2 (46-82)||(44600469-44600505)
[»] chr3 (7 HSPs)
chr3 (37-73)||(2128346-2128382)
chr3 (38-74)||(21661452-21661488)
chr3 (37-81)||(25964373-25964417)
chr3 (37-69)||(34318031-34318063)
chr3 (37-81)||(41028946-41028990)
chr3 (37-81)||(48528509-48528553)
chr3 (37-81)||(50016053-50016097)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 12631606 - 12631395
Alignment:
Q  18 ttataggaaaacaatctaatattttatatttggttatagaaatagcttatacataagaacttatcgtgatgcttatgttatagaattannnnnnnnnnnn 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                
T  12631606 ttataggaaaacaatctaatattttatctttggttatagaaatagcttatacataagaacttatcgtgatgcttatgttatagaatgattttttattttt 12631507  T
Q  118 n-atccaaacagggcctaatacaagggcagtaagcaagttagactccttccagggttgagaatctgtaataccttccaatatatcttagagactttgctg 216  Q
      ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12631506 ttatccaaacagggcgtaatacaagggcagtaagcaagttagactccttccagggttgagaatctgtaataccttccaatatatcttagagactttgctg 12631407  T
Q  217 gtgaaccatctg 228  Q
    ||||||||||||    
T  12631406 gtgaaccatctg 12631395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 10452455 - 10452492
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataag 74  Q
    |||||||||||| |||||||||||||||||||||||||    
T  10452455 tattttatattttgttatagaaatagcttatacataag 10452492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 1810364 - 1810439
Alignment:
Q  7 acagcttatag-ttataggaaaacaatctaatattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||||||||| ||||| ||||||||| |  |||||||| ||| |||||||||||||||| | |||||| ||||||    
T  1810364 acagcttatagcttatatgaaaacaatattttattttatcttttgttatagaaatagcttttgcataagcacttat 1810439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 31668781 - 31668824
Alignment:
Q  38 attttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttat 31668824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 31461651 - 31461609
Alignment:
Q  39 ttttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||    
T  31461651 ttttatcttttgttatagaaatagcttatacataagcacttat 31461609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 4247731 - 4247772
Alignment:
Q  39 ttttatatttggttatagaaatagcttatacataagaactta 80  Q
    |||||| ||| ||||||||||||||||||||||||| |||||    
T  4247731 ttttatcttttgttatagaaatagcttatacataagcactta 4247772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 29249445 - 29249405
Alignment:
Q  41 ttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||||||||||||||| ||||||||| ||||||    
T  29249445 ttatattttgttatagaaatagctgatacataagcacttat 29249405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29588855 - 29588811
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||    
T  29588855 tattttatattttgttatagaaatagcttatacataagcacttat 29588811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 7096222 - 7096264
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaactt 79  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||    
T  7096222 tattttatcttttgttatagaaatagcttatacataagcactt 7096264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 13224404 - 13224362
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaactt 79  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||    
T  13224404 tattttatcttttgttatagaaatagcttatacataagcactt 13224362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 18704133 - 18704174
Alignment:
Q  40 tttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||| ||| |||||||||||| |||||||||||||||||||    
T  18704133 tttatcttttgttatagaaataacttatacataagaacttat 18704174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 1773521 - 1773557
Alignment:
Q  38 attttatatttggttatagaaatagcttatacataag 74  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  1773521 attttatcttttgttatagaaatagcttatacataag 1773557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 11684398 - 11684354
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| |||||| ||||||||||||||| || ||||||    
T  11684398 tattttatattttgttataaaaatagcttatacattagcacttat 11684354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 12407756 - 12407792
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  12407756 tattttatcttttgttatagaaatagcttatacataa 12407792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 12460095 - 12460131
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  12460095 tattttatcttttgttatagaaatagcttatacataa 12460131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 20982230 - 20982274
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||||||  || ||||||||||||||||||||||||| ||||||    
T  20982230 tattttatcctttgttatagaaatagcttatacataagcacttat 20982274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 26516273 - 26516229
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| ||| ||||||||||||||||||||| ||||||    
T  26516273 tattttatcttttgttttagaaatagcttatacataagcacttat 26516229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 1169 - 1213
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||    
T  1169 tattttatcttttgttatagaaatagcttatacataagcacttat 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 2806 - 2762
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||    
T  2806 tattttatcttttgttatagaaatagcttatacataagcacttat 2762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 35869812 - 35869768
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  35869812 tattttatattttgttgtagaaatcgcttatacataagaacttat 35869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 42597376 - 42597332
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||    
T  42597376 tattttatcttttgttatagaaatagcttatacataagtacttat 42597332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 44617862 - 44617918
Alignment:
Q  18 ttataggaaaacaatctaa-tattttatatttggttatagaaatagcttatacataa 73  Q
    ||||| ||||||| ||||| |||||||| ||| ||||||||||||||||||||||||    
T  44617862 ttatatgaaaacagtctaactattttatttttagttatagaaatagcttatacataa 44617918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 14949863 - 14949821
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaactt 79  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||    
T  14949863 tattttatcttttgttatagaagtagcttatacataagaactt 14949821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 8536150 - 8536187
Alignment:
Q  44 tatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  8536150 tattttgttatagaaatagcttatacataagcacttat 8536187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 10114465 - 10114420
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttatc 82  Q
    |||||||| ||| | ||||||||||||||||||||||| |||||||    
T  10114465 tattttatcttttgctatagaaatagcttatacataagcacttatc 10114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 26215471 - 26215434
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataag 74  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  26215471 tattttatcttttgttatagaaatagcttatacataag 26215434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 14482177 - 14482133
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| ||||||||||||| ||||||||||| ||||||    
T  14482177 tattttatcttttgttatagaaatagtttatacataagcacttat 14482133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 46213778 - 46213734
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| |||||||||||||||| |||||||| ||||||    
T  46213778 tattttatattttgttatagaaatagcttttacataagcacttat 46213734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 33894598 - 33894555
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaactta 80  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||    
T  33894598 tattttatcttttgttatagaaatagcttatacataagcactta 33894555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 1432062 - 1432103
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaact 78  Q
    |||||||| ||| |||||||||||| ||||||||||||||||    
T  1432062 tattttatcttttgttatagaaataacttatacataagaact 1432103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 35808998 - 35809035
Alignment:
Q  36 atattttatatttggttatagaaatagcttatacataa 73  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  35808998 atattttatcttttgttatagaaatagcttatacataa 35809035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 24973919 - 24973875
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| |||||||||||||||| |||||||| ||||||    
T  24973919 tattttatcttttgttatagaaatagcttttacataagcacttat 24973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 30496679 - 30496643
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  30496679 tattttatattttgttatagaaatagtttatacataa 30496643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 35007579 - 35007543
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  35007579 tattttatctttagttatagaaatagcttatacataa 35007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 37832218 - 37832284
Alignment:
Q  24 gaaaacaatctaa---tattttatatttggttatagaaatagcttatacataagaacttatcgtgat 87  Q
    |||||||||||||   |||||||||||| | ||||||||||| ||||||| ||| ||||||| ||||    
T  37832218 gaaaacaatctaactttattttatattttgctatagaaatagtttatacacaagcacttatcatgat 37832284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 43328223 - 43328187
Alignment:
Q  38 attttatatttggttatagaaatagcttatacataag 74  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  43328223 attttatctttggttatagaaatagctaatacataag 43328187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 47134838 - 47134882
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| |||||||||| |||||||||||| ||||| ||||||    
T  47134838 tattttatctttggttataaaaatagcttatagataaggacttat 47134882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 49060515 - 49060479
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  49060515 tattttattttttgttatagaaatagcttatacataa 49060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 24444013 - 24443969
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||    
T  24444013 tattttatattttgttgtagaaatcgcttatacataagaacttat 24443969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 47970292 - 47970249
Alignment:
Q  38 attttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||    
T  47970292 attttatcttttgttatagaaatagcttatacataagcacttat 47970249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 4191712 - 4191670
Alignment:
Q  39 ttttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||    
T  4191712 ttttatcttttgttatagaaatagcttatacataagcacttat 4191670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 6364124 - 6364074
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttatcgtgat 87  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||| ||||    
T  6364124 tattttatcttttgttatagaaatagcttatacataagtgcttatcttgat 6364074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 23503534 - 23503484
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttatcgtgat 87  Q
    |||||||||||| ||||||||| ||| ||||||||||| ||||||| ||||    
T  23503534 tattttatattttgttatagaattagattatacataagcacttatcatgat 23503484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 25487640 - 25487677
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataag 74  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  25487640 tattttattttttgttatagaaatagcttatacataag 25487677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 17125725 - 17125761
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||||||| |||||| |||||||||||||||||    
T  17125725 tattttatattttgttataaaaatagcttatacataa 17125761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 24936285 - 24936249
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||||||| |||||||||||| |||||||||||    
T  24936285 tattttatattttgttatagaaataacttatacataa 24936249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 51044554 - 51044590
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  51044554 tattttatcttttgttatagaaatagcttatacataa 51044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 55994283 - 55994319
Alignment:
Q  38 attttatatttggttatagaaatagcttatacataag 74  Q
    |||||||||||  ||||||||||||||||||||||||    
T  55994283 attttatattttcttatagaaatagcttatacataag 55994319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 23895311 - 23895267
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||    
T  23895311 tattttatcttttgttatagaaatagcttatacataataacttat 23895267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 172316 - 172279
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataag 74  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  172316 tattttatctttagttatagaaatagcttatacataag 172279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 2462938 - 2462905
Alignment:
Q  41 ttatatttggttatagaaatagcttatacataag 74  Q
    |||||||| |||||||||||||||||||||||||    
T  2462938 ttatattttgttatagaaatagcttatacataag 2462905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 13037836 - 13037795
Alignment:
Q  40 tttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||    
T  13037836 tttatcttttgttatagaaatagcttatacataagcacttat 13037795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 50319267 - 50319230
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataag 74  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  50319267 tattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 4549841 - 4549793
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttatcgtg 85  Q
    |||||||| ||| |||||||||||||||| |||||||| | ||||||||    
T  4549841 tattttatcttttgttatagaaatagcttgtacataagcatttatcgtg 4549793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 37593748 - 37593814
Alignment:
Q  24 gaaaacaatctaa---tattttatatttggttatagaaatagcttatacataagaacttatcgtgat 87  Q
    |||||||||||||   |||||||| ||  |||||||||||| |||||||||||  ||||||||||||    
T  37593748 gaaaacaatctaacattattttatcttgtgttatagaaataccttatacataaacacttatcgtgat 37593814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 42397738 - 42397694
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| |||| |||||||||||||||||||| ||||||    
T  42397738 tattttatgttttgttacagaaatagcttatacataagcacttat 42397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 44375432 - 44375476
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||| ||||| |||||||| ||||| |||||||||||||    
T  44375432 tattttatatctggttttagaaataacttatccataagaacttat 44375476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 5133747 - 5133710
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataag 74  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  5133747 tattttatcttttgttatagaaatagcttatacataag 5133710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 41033047 - 41033088
Alignment:
Q  39 ttttatatttggttatagaaatagcttatacataagaactta 80  Q
    |||||| ||| ||||||||||||||||||||||||| |||||    
T  41033047 ttttatcttttgttatagaaatagcttatacataagcactta 41033088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 3673782 - 3673738
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| |||||||||||| || ||||||||| ||||||    
T  3673782 tattttatattttgttatagaaataactaatacataagcacttat 3673738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5903276 - 5903232
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||||||| |||||||||||| | ||| |||||||||||||    
T  5903276 tattttatattttgttatagaaataacgtatgcataagaacttat 5903232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 15288708 - 15288752
Alignment:
Q  44 tatttggttatagaaatagcttatacataagaacttatcgtgatg 88  Q
    ||||| |||||||||||||||||||||||||  |||||| |||||    
T  15288708 tattttgttatagaaatagcttatacataagcgcttatcttgatg 15288752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 25609771 - 25609727
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| |||  |||||||||||||||||||||||| ||||||    
T  25609771 tattttatcttttcttatagaaatagcttatacataagcacttat 25609727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 34054996 - 34055040
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| |||||||||||||| |||||||||| ||||||    
T  34054996 tattttatcttttgttatagaaatagcctatacataagcacttat 34055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 35755597 - 35755633
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||| |||||| |||||||||||||||||||||||    
T  35755597 tattttctatttgattatagaaatagcttatacataa 35755633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 44600505 - 44600469
Alignment:
Q  46 tttggttatagaaatagcttatacataagaacttatc 82  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  44600505 tttggctatagaaatagcttatacataagcacttatc 44600469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 2128346 - 2128382
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataa 73  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  2128346 tattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 21661488 - 21661452
Alignment:
Q  38 attttatatttggttatagaaatagcttatacataag 74  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  21661488 attttatattttgttattgaaatagcttatacataag 21661452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 25964417 - 25964373
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| ||| |||||| |||||||||||||| ||||||||||    
T  25964417 tattttatcttttgttataaaaatagcttatacaaaagaacttat 25964373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 34318063 - 34318031
Alignment:
Q  37 tattttatatttggttatagaaatagcttatac 69  Q
    |||||||||||| ||||||||||||||||||||    
T  34318063 tattttatattttgttatagaaatagcttatac 34318031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 41028946 - 41028990
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||    
T  41028946 tattttttcttttgttatagaaatagcttatacataagcacttat 41028990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 48528553 - 48528509
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    |||||||| | | ||||||||||||||||||||||||| ||||||    
T  48528553 tattttatttcttgttatagaaatagcttatacataagtacttat 48528509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 50016053 - 50016097
Alignment:
Q  37 tattttatatttggttatagaaatagcttatacataagaacttat 81  Q
    ||||||||||||||||||||||||||   ||||||||| ||||||    
T  50016053 tattttatatttggttatagaaatagtccatacataagcacttat 50016097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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