View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_low_23 (Length: 231)
Name: NF21356_low_23
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 65 - 217
Target Start/End: Original strand, 55987231 - 55987384
Alignment:
| Q |
65 |
atttaaaggaccatctaacaaagctagcaaaccgagtttccttagcnnnnnnnnnn-cttccaattgatatctcatgaattgattaatcaagaaaatcac |
163 |
Q |
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| T |
55987231 |
atttaaaggaccatctaacaaagctagcaaaccgagtttccttagcaaaaaaaaaaacttccaattgatatctcatgaattgattaatcaagaaaatcac |
55987330 |
T |
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| Q |
164 |
agttggtggaataaaaagataaaccaaataatgcacaatcacacggtatatgat |
217 |
Q |
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| T |
55987331 |
agttggtggaataaaaagataaaccaaataatgcacaatcacacggtagatgat |
55987384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 55987132 - 55987084
Alignment:
| Q |
20 |
tctatgtgaatacagaacatgcaatagtttgataatgggttaggtattt |
68 |
Q |
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| T |
55987132 |
tctatgtgaatacagaacatgcaatagtttgataatgggttaggtattt |
55987084 |
T |
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