View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21356_low_5 (Length: 431)

Name: NF21356_low_5
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21356_low_5
NF21356_low_5
[»] chr1 (7 HSPs)
chr1 (17-423)||(28092280-28092686)
chr1 (97-155)||(26093429-26093487)
chr1 (89-130)||(27687301-27687342)
chr1 (97-157)||(35538676-35538736)
chr1 (97-155)||(917059-917117)
chr1 (97-155)||(8896357-8896415)
chr1 (160-192)||(3654691-3654723)
[»] chr5 (5 HSPs)
chr5 (97-155)||(31655088-31655146)
chr5 (97-155)||(1248624-1248682)
chr5 (97-155)||(27580635-27580693)
chr5 (97-156)||(22848404-22848463)
chr5 (97-156)||(37184099-37184158)
[»] chr3 (7 HSPs)
chr3 (97-155)||(24569122-24569180)
chr3 (97-155)||(49830164-49830222)
chr3 (97-155)||(28690804-28690862)
chr3 (97-155)||(30190682-30190740)
chr3 (97-155)||(36476619-36476677)
chr3 (97-155)||(37695688-37695746)
chr3 (88-156)||(54477472-54477540)
[»] chr2 (7 HSPs)
chr2 (97-155)||(14523392-14523450)
chr2 (97-155)||(16805916-16805974)
chr2 (97-155)||(16845197-16845255)
chr2 (97-176)||(1206723-1206802)
chr2 (97-156)||(43410460-43410519)
chr2 (97-156)||(45235615-45235674)
chr2 (97-155)||(37322463-37322521)
[»] chr7 (3 HSPs)
chr7 (97-176)||(30107137-30107216)
chr7 (97-155)||(34100576-34100634)
chr7 (97-130)||(39308653-39308686)
[»] chr6 (3 HSPs)
chr6 (97-155)||(1225082-1225140)
chr6 (97-155)||(13087565-13087623)
chr6 (101-155)||(17828975-17829029)
[»] chr4 (8 HSPs)
chr4 (97-155)||(49428370-49428428)
chr4 (98-151)||(461997-462050)
chr4 (97-155)||(5841455-5841513)
chr4 (97-155)||(7061692-7061750)
chr4 (97-155)||(28500919-28500977)
chr4 (97-155)||(38405130-38405188)
chr4 (101-155)||(52247460-52247514)
chr4 (97-153)||(42616931-42616987)
[»] chr8 (3 HSPs)
chr8 (97-156)||(396634-396693)
chr8 (89-155)||(36006902-36006968)
chr8 (98-155)||(31331443-31331500)
[»] scaffold0330 (1 HSPs)
scaffold0330 (97-155)||(5425-5483)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 28092686 - 28092280
Alignment:
Q  17 aattgttgtatttgagttgtacatggtttttaagaaaattattagttggttgtttt-atttttgatagatcagttagttgggttgatttcaatagtaaaa 115  Q
    |||||||||||||||||||||  ||||| |||||||||||||| |||||||||||| ||||||||||||  |||||||||||||||||| ||| ||||||    
T  28092686 aattgttgtatttgagttgtatgtggttcttaagaaaattatttgttggttgtttttatttttgatagagtagttagttgggttgattttaatggtaaaa 28092587  T
Q  116 ttaatattatttacttgagtatccttattaattgtagttaagaagaatgaaatttaataaacagagatatattagtggcaaagaaataaatgtatttcga 215  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||     
T  28092586 ttaatattatttacttgagtatctttattaatcgtagttaagaagaatgaaatc-aataaacaaagatatattagtggcaaagaaataaacgtatttcgg 28092488  T
Q  216 tatttgtattctaaagtcaatcaannnnnnnctttgatatcaaaatcaatcattttgaatcaaagaaaaaatgcaaaagtgataattattacgagagagt 315  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28092487 tatttgtattctaaagtcaatcaatttttttctttgatatcaaaatcaatcattttgaatcaaagaaaaaatgcaaaagtgataattattatgagagagt 28092388  T
Q  316 aacataattaagttcgtttgtaaagaagtccagagtgagtatataatatatgaataacagagttaatggaatgatttaaatgaagtgctctataatgtat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28092387 aacataattaagttcgtttgtaaagaagtccagagtgagtatataatatatgaataacagagttaatggaatgatttaaatgaagtgctctataatgtat 28092288  T
Q  416 cctttgct 423  Q
    ||||||||    
T  28092287 cctttgct 28092280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 26093487 - 26093429
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| ||||| |  | |||||||||||||||||||||    
T  26093487 gttgatttcaatggtaaaattaatatcatttattaaaatatccttattaattgtagtta 26093429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 27687342 - 27687301
Alignment:
Q  89 ttagttgggttgatttcaatagtaaaattaatattatttact 130  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  27687342 ttagttgtgttgatttcaatggtaaaattaatattatttact 27687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 35538736 - 35538676
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaag 157  Q
    ||||||||||||  ||||||  ||||||||||||  | |||||||||||||||||||||||    
T  35538736 gttgatttcaatgataaaatggatattatttactaaaatatccttattaattgtagttaag 35538676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 917117 - 917059
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| ||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  917117 gttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagtta 917059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 8896357 - 8896415
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | |||  ||||||||||||||||    
T  8896357 gttgatttcaatggtaaaattaatatcatttactaaaatatatttattaattgtagtta 8896415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 3654723 - 3654691
Alignment:
Q  160 gaatgaaatttaataaacagagatatattagtg 192  Q
    ||||||||||||||||| |||||||||||||||    
T  3654723 gaatgaaatttaataaatagagatatattagtg 3654691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 31655146 - 31655088
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | |||||||||||||||||||||    
T  31655146 gttgatttcaatggtaaaattaatatcatttactataatatccttattaattgtagtta 31655088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 1248624 - 1248682
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  1248624 gttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagtta 1248682  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 27580693 - 27580635
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  27580693 gttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagtta 27580635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 22848404 - 22848463
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaa 156  Q
    ||||||||||||||||||||||||| |||||| |  |  | |||||||||||||||||||    
T  22848404 gttgatttcaatagtaaaattaatagtatttattaaaacacccttattaattgtagttaa 22848463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 37184099 - 37184158
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaa 156  Q
    |||||||||||| ||||||||||||| |||||||  | |||| ||||| |||||||||||    
T  37184099 gttgatttcaatggtaaaattaatatcatttactaaaatatctttattcattgtagttaa 37184158  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 24569122 - 24569180
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| |||||||||||||||||||||  | || ||||||||||||||||||    
T  24569122 gttgatttcaatggtaaaattaatattatttactaaaatacccttattaattgtagtta 24569180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 49830222 - 49830164
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||||||||||||||||| |||||||  | || | ||||||||||||||||    
T  49830222 gttgatttcaatagtaaaattaatatcatttactaaaataccattattaattgtagtta 49830164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 28690804 - 28690862
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||  ||||||||||||| |||||||  | |||| ||||||||||||||||    
T  28690804 gttgatttcaacggtaaaattaatatcatttactaaaatatctttattaattgtagtta 28690862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 30190682 - 30190740
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||| ||| |||||||  | || ||||||||||||||||||    
T  30190682 gttgatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagtta 30190740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 36476677 - 36476619
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    ||||||| |||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  36476677 gttgattgcaatggtaaaattaatatcatttactaaaatacccttattaattgtagtta 36476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 37695688 - 37695746
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  |  | ||||||||||||||||||    
T  37695688 gttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagtta 37695746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 54477472 - 54477540
Alignment:
Q  88 gttagttgggttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaa 156  Q
    |||| ||| |||||||| ||| ||||||||||||| |||||||  | |||  |||||||||||||||||    
T  54477472 gttaattgtgttgattttaatggtaaaattaatatcatttactaaaatatttttattaattgtagttaa 54477540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 14523392 - 14523450
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | |||||||||||||||||||||    
T  14523392 gttgatttcaatggtaaaattaatatcatttactaaaatatccttattaattgtagtta 14523450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 16805974 - 16805916
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| ||||||||||||| ||| |||||||  | |||||||||||||||||||||    
T  16805974 gttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagtta 16805916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 16845255 - 16845197
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| ||||||||||||| ||| |||||||  | |||||||||||||||||||||    
T  16845255 gttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagtta 16845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 1206723 - 1206802
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaagaagaatgaaatttaataaa 176  Q
    |||||||||| | ||||||||| ||  |||||||  | |||||||||||||||||||||||  | |||||||| ||||||    
T  1206723 gttgatttcagtggtaaaattagtaacatttactaaaatatccttattaattgtagttaagttggatgaaattcaataaa 1206802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 43410519 - 43410460
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaa 156  Q
    |||||| |||||  |||||||||||| |||||||  | ||||||||||||||||||||||    
T  43410519 gttgatatcaatgataaaattaatatcatttactaaaatatccttattaattgtagttaa 43410460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 45235674 - 45235615
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaa 156  Q
    |||||||||||| ||||||||||||| |||||||  |  | |||||||||||||||||||    
T  45235674 gttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagttaa 45235615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 37322521 - 37322463
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| ||||| |  | || ||||||||||||||||||    
T  37322521 gttgatttcaatggtaaaattaatatcatttattaaaatacccttattaattgtagtta 37322463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 30107216 - 30107137
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaagaagaatgaaatttaataaa 176  Q
    |||||||| ||| |||||||||||||||||||||| | || |||||| |||| |||| ||| ||| ||||||| ||||||    
T  30107216 gttgattttaatggtaaaattaatattatttacttaaatacccttatgaattatagtcaagtagagtgaaattcaataaa 30107137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 34100576 - 34100634
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||||||||||||| ||  |||||||  | |||| ||||||||||||||||    
T  34100576 gttgatttcaatagtaaaattagtagcatttactaaaatatctttattaattgtagtta 34100634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 130
Target Start/End: Complemental strand, 39308686 - 39308653
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttact 130  Q
    |||||||| |||||||||||||||||||||||||    
T  39308686 gttgattttaatagtaaaattaatattatttact 39308653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 1225140 - 1225082
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| |||||||||||||||||||||||||  | ||| |||||||||| ||||||    
T  1225140 gttgatttaaatagtaaaattaatattatttactaaaatattcttattaattttagtta 1225082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 13087623 - 13087565
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  |  ||||||||||||| ||||||    
T  13087623 gttgatttcaatggtaaaattaatatcatttactaaaacatccttattaattatagtta 13087565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 17829029 - 17828975
Alignment:
Q  101 atttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    ||||||| |||||||||||||| |||||||  | |||| ||||||||||||||||    
T  17829029 atttcaacagtaaaattaatatcatttactaaaatatctttattaattgtagtta 17828975  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 49428370 - 49428428
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  49428370 gttgatttcaatggtaaaattaatataatttactaaaatacccttattaattgtagtta 49428428  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 462050 - 461997
Alignment:
Q  98 ttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgta 151  Q
    ||||||||||| |||||| ||||||||||||||  | |||||||||||||||||    
T  462050 ttgatttcaatggtaaaagtaatattatttactaaaatatccttattaattgta 461997  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 5841455 - 5841513
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| ||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  5841455 gttgattttaatggtaaaattaatatcatttactaaaatacccttattaattgtagtta 5841513  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 7061692 - 7061750
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||| ||| |||||||  | |||| ||||||||||||||||    
T  7061692 gttgatttcaatggtaaaattagtatcatttactataatatctttattaattgtagtta 7061750  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 28500919 - 28500977
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||| ||||||||||||| |||||||  | || |||||||||||| |||||    
T  28500919 gttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgcagtta 28500977  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 38405130 - 38405188
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| ||| ||||||||||||| |||||||  | || ||||||||||||||||||    
T  38405130 gttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagtta 38405188  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 52247460 - 52247514
Alignment:
Q  101 atttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||| ||||||||||||  |||||||  | |||||||||||||||||||||    
T  52247460 atttcaatggtaaaattaatacaatttactaaaatatccttattaattgtagtta 52247514  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 42616931 - 42616987
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagt 153  Q
    |||||||||||| ||||||||||||| |||||||  | |||  ||||||||||||||    
T  42616931 gttgatttcaatggtaaaattaatatcatttactaaaatatttttattaattgtagt 42616987  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 396634 - 396693
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagttaa 156  Q
    |||||||||||  ||||||||| ||| |||||||  | ||||||||||||||||||||||    
T  396634 gttgatttcaacggtaaaattagtatcatttactacaatatccttattaattgtagttaa 396693  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 36006902 - 36006968
Alignment:
Q  89 ttagttgggttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    ||||||| |||||||| |||  |||||||||||||||| |||  | ||||| |||||||||||||||    
T  36006902 ttagttgtgttgattttaatgataaaattaatattattgactaaaatatccctattaattgtagtta 36006968  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 31331500 - 31331443
Alignment:
Q  98 ttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    |||||||||||  |||||||| |||||||||||  | |||| ||||||||||||||||    
T  31331500 ttgatttcaattataaaattattattatttactaaaatatcattattaattgtagtta 31331443  T

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Target: scaffold0330 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 5483 - 5425
Alignment:
Q  97 gttgatttcaatagtaaaattaatattatttacttgagtatccttattaattgtagtta 155  Q
    ||||| |||||| ||||||||||||| |||||||  | |||||||||||||| ||||||    
T  5483 gttgaattcaatggtaaaattaatatcatttactaaaatatccttattaattttagtta 5425  T

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