View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21356_low_6 (Length: 421)
Name: NF21356_low_6
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 48431494 - 48431263
Alignment:
| Q |
18 |
gcaagaagagaaataaagctcaaagagttataattttatgaatctagttttgttcttgtaatgtatggattaaaagttgctcgtgatgttattccaggtt |
117 |
Q |
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| T |
48431494 |
gcaagaagagaaataaagctcaaagagttataattttatgaatctagttttgttcttgtaatgtatggattaaaagttgctcgtgatgttattccaggtt |
48431395 |
T |
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| Q |
118 |
aagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagaacaagaacacaacttttcatcatgcatcaggttatgacaagaagg |
217 |
Q |
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| T |
48431394 |
aagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagtacaagaacacaacttttcatcatgcatcaggttatgacaagaagg |
48431295 |
T |
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| Q |
218 |
aatgtgtgggcatgaatttgagtattaaattt |
249 |
Q |
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| T |
48431294 |
aatgtgtgggcatgaatttgagtatcaaattt |
48431263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 48431266 - 48431199
Alignment:
| Q |
299 |
atttcattcattgttattttagtatattaatgtcatgtagtcctacactgatttgtgctttcattccc |
366 |
Q |
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| T |
48431266 |
atttcattcattgttattttagtatattaatgtcatgtcgtcctacactgatttgtgctttcattccc |
48431199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 1925459 - 1925606
Alignment:
| Q |
78 |
atgtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagaacaag |
177 |
Q |
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| T |
1925459 |
atgtatggattaaaatatgctcctgatat-attccaggtgaagtgtgcgcaagctctccttgaggctggagcaaaagtagatgctttggataagaacaag |
1925557 |
T |
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| Q |
178 |
aacacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgg |
226 |
Q |
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| T |
1925558 |
aacacagctcttcattatgcagcaggttatggcaggaaagaatgtgtgg |
1925606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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