View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21356_low_8 (Length: 380)
Name: NF21356_low_8
Description: NF21356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21356_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 41610589 - 41610947
Alignment:
| Q |
7 |
ctgaaatgaagctaacaaaccaagcattattatagacaacaacaaaagtttctgaaactgattttaacgttccaactttatgcaataaaccaggaatcac |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41610589 |
ctgaaaagaagctaacaaaccaagcattattatagacaacaacaaaagtttctgaaactgattttaacgttccaactttattcaataaaccaggaatcac |
41610688 |
T |
|
| Q |
107 |
aggtaacattccaaaaacaagagccacaattgctgccacattaaatcccttagtgtaatagtaagcaccataaggatttcttgaatacaaatctccaatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41610689 |
aggtaacattccaaaaacaagagccacaattgctgccacattaaatcccttagtgtaatagtaagcaccataatgatttcttgaatacaaatctccaatg |
41610788 |
T |
|
| Q |
207 |
cttaatttagttttcttcacaagataataatccactagaataattcctccaattggacccatcaatgcagaataaccaactaaccaagtatatacaaagg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41610789 |
cttaatttagttttcttcacaagataataatccactagaataattcctccaattggacccatcaatgcagaataaccaactaaccaagtatacacaaagc |
41610888 |
T |
|
| Q |
307 |
tctcacttgatttaagaagcttccaaggttgaaatgcaattccaagaaatgctgttaat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41610889 |
tctcacttgatttaagaagcttccaaggttgaaatgcaattccaagaaatgctgttaat |
41610947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 27113251 - 27112906
Alignment:
| Q |
7 |
ctgaaatgaagctaacaaaccaagcattattatagacaacaacaaaagtttctgaaactgattttaacgttccaactttatgcaataaaccaggaatcac |
106 |
Q |
| |
|
|||||| ||| |||| |||||||||||| || || || |||||||||| | | || ||| |||| |||||||||| ||||| |||||||||| || |
|
|
| T |
27113251 |
ctgaaaagaaactaataaaccaagcattgttgtataccacaacaaaagcattaggaattgaacttaaaattccaactttctgcaagaaaccaggaacaac |
27113152 |
T |
|
| Q |
107 |
aggtaacattccaaaaacaagagccacaattgctgccacattaaatcccttagtgtaatagtaagcaccataaggatttcttgaatacaaatctccaatg |
206 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||||||||| |||||||| ||||| || |||||||| ||||| ||||| | |||| || ||||| | | |
|
|
| T |
27113151 |
aggtaaaattccaacaactaaagccacaattgctgctacattaaacccctttgtataatagtatgcacctaaaggactccttgtgtataaatcacttacc |
27113052 |
T |
|
| Q |
207 |
cttaatttagttttcttcacaagataataatccactagaataattcctccaattggacccatcaatgcagaataaccaactaaccaagtatatacaaagg |
306 |
Q |
| |
|
|| || || |||| | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27113051 |
ctcaacttcattttttgtacaagataataatccactagaacaatccctccaattggacccatcaatgcagaataaccaactaaccaagtataaacaaaac |
27112952 |
T |
|
| Q |
307 |
tctcacttgatttaagaagcttccaaggttgaaatgcaattccaag |
352 |
Q |
| |
|
||||||| || || | |||| ||||||||||||| |||||||||| |
|
|
| T |
27112951 |
tctcactagacttcaaaagcctccaaggttgaaacacaattccaag |
27112906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 20625380 - 20625307
Alignment:
| Q |
130 |
ccacaattgctgccacattaaatcccttagtgtaatagtaagcaccataaggatttcttgaatacaaatctcca |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
20625380 |
ccacaattgctgccgcattaaatcccttagagtaatagtaagcaccataatgatttttggaatacaaatctcca |
20625307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University