View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21357_high_16 (Length: 213)
Name: NF21357_high_16
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_high_16 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 28915560 - 28915401
Alignment:
| Q |
54 |
catataacaatagttgaaaatttgagctactaaagccgaactagacgacaaaatgtttagagagccaaacctcgaagttgagtatgttctaataaaaata |
153 |
Q |
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| T |
28915560 |
catataacaatagttgaaaatttgagctattaaagccgaacgagacgacaaaacgttcagagagccaaacctcgaagttgagtatgttctaataaaaata |
28915461 |
T |
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| Q |
154 |
ttaactgtgaaatctataaaataaaagtttattttgagaagtataagttaaacatttgtc |
213 |
Q |
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| T |
28915460 |
ttaactgtgaaatctataaaataaaagtttattttgagaagtataagttaaacatttgtc |
28915401 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 6562068 - 6562133
Alignment:
| Q |
148 |
aaaatattaactgtgaaatctataaaataaaagtttattttgagaagtataagttaaacatttgtc |
213 |
Q |
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| T |
6562068 |
aaaatattaattgtggaatttataaaataaaagtttattgtgaggagtataagttaaacatttgtc |
6562133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 6561825 - 6561896
Alignment:
| Q |
7 |
aaaaggcaaaaagacttctacactagaaaa-tttaagtatttttgtatcatataacaatagttgaaaatttg |
77 |
Q |
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| T |
6561825 |
aaaaggcaaaaagacttctatactacaaaaatttaggtatttttttattatataacaatagttgaaaatttg |
6561896 |
T |
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