View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21357_low_10 (Length: 357)
Name: NF21357_low_10
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 32970884 - 32970763
Alignment:
| Q |
20 |
ttaagctcggtggagttggtgttggttgatcagaatgtaagtgtttatctgtacagggctatatatattgtatgattgtgtttgtttctctgacgaagtg |
119 |
Q |
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| T |
32970884 |
ttaagctcggtggagttggtgttggttgatcagaatgtaagtgtttatctgtacagggctatatatattgtatgattgtgtttgtttctctgacgaagtg |
32970785 |
T |
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| Q |
120 |
tgcttaatagctaatatttgtg |
141 |
Q |
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|||||| ||||||||||||||| |
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| T |
32970784 |
tgcttagtagctaatatttgtg |
32970763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 218 - 345
Target Start/End: Complemental strand, 32970685 - 32970557
Alignment:
| Q |
218 |
ggtctgaagtatttggatgcgttacggaatatggtttttgtcgaagaccggtgaatgtt-gatctttgagagtttctcgtgtttgcttgggataaaggca |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
32970685 |
ggtctgaagtatttggatgcgttacggaataaggtttttgtcgaagacctgtgaatgtttgatctttgagagtttatcgtgtttgcttgggataaaggca |
32970586 |
T |
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| Q |
317 |
ttggtgagatgtggttggatgggtgatga |
345 |
Q |
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|| ||||||||||||||| |||||||||| |
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| T |
32970585 |
ttcgtgagatgtggttggttgggtgatga |
32970557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 3984341 - 3984462
Alignment:
| Q |
20 |
ttaagctcggtggagttggtgttggttgatcagaatgtaagtgtttatctgtacagggctatatatattgtatgattgtgtttgtttctctgacgaagtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3984341 |
ttaagctcggtggagttggtgttggttgatcagaatgtaagtgtttatctgtacagggctatatatattgtatgattgtgtttgtttctctgacgaagtg |
3984440 |
T |
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| Q |
120 |
tgcttaatagctaatatttgtg |
141 |
Q |
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|||||| ||||||||||||||| |
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| T |
3984441 |
tgcttactagctaatatttgtg |
3984462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 218 - 345
Target Start/End: Original strand, 3984540 - 3984668
Alignment:
| Q |
218 |
ggtctgaagtatttggatgcgttacggaatatggtttttgtcgaagaccggtgaatgtt-gatctttgagagtttctcgtgtttgcttgggataaaggca |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||| |
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| T |
3984540 |
ggtctgaagtatttggatgcgttacggaataaggtttttgtcgaagacctgtgaatgtttgatctttgagagtttctcgtgttagcttaggataaaggca |
3984639 |
T |
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| Q |
317 |
ttggtgagatgtggttggatgggtgatga |
345 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
3984640 |
ttggtgagatgtggttggttgggtgatga |
3984668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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