View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21357_low_11 (Length: 313)
Name: NF21357_low_11
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_11 |
 | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0264 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 15816 - 15523
Alignment:
| Q |
17 |
taaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15816 |
taaaaatgcaacggatcaaatatactcaaagtgtctttgatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatc |
15717 |
T |
|
| Q |
117 |
ctctctaatattgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcaaatcagttat |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15716 |
ctctctaacattgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttat |
15617 |
T |
|
| Q |
217 |
ctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
15616 |
ctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgataaacaaaccttgtatagtcttggaca |
15523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 22205297 - 22205590
Alignment:
| Q |
17 |
taaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22205297 |
taaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatc |
22205396 |
T |
|
| Q |
117 |
ctctctaatattgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcaaatcagttat |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22205397 |
ctctctaacattgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttat |
22205496 |
T |
|
| Q |
217 |
ctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
22205497 |
ctcaacttgcgaatgatacaggggacagtgatgaaagatataagactaattcattaaaactgaatgatgtacaaaccttgtatagtcttggaca |
22205590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 20085865 - 20085570
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatcc |
117 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||| ||| ||| || |||| ||| || |
|
|
| T |
20085865 |
aaaaatgcaactgaccaaatatactcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttgcttcactactctgatcgaaagttct |
20085766 |
T |
|
| Q |
118 |
tctctaatattgaaacaagtcctatgtatagagatataaatatcact---gattacaccacaaaccaaaactggttcactagtaccttatcaaatcagtt |
214 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||||||||||||| |||| || |||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
20085765 |
tctctaacgtcgaaacaagtcctatgtatagcgatataaatatcaccaaagattccatcacaaaccaaaacttgttcactagtacattatcaaatcagtt |
20085666 |
T |
|
| Q |
215 |
atctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||| |
|
|
| T |
20085665 |
atctcaacttgcgaatgatacaggggacagtggtgaaagatataagactaattcattaaaactaaatgatgtacaaaccttgtatactcttggaca |
20085570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 20237778 - 20237483
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatcc |
117 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||| |||||||||| |||| ||| || |
|
|
| T |
20237778 |
aaaaatgctgcggaacaaatatactcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattctgatcggaaattct |
20237679 |
T |
|
| Q |
118 |
tctctaatattgaaacaagtcctatgtatagagatataaatatcactga---ttacaccacaaaccaaaactggttcactagtaccttatcaaatcagtt |
214 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| || || || |||| ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
20237678 |
tctctaacatcgaaacaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattatcaaatcagtt |
20237579 |
T |
|
| Q |
215 |
atctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
20237578 |
atatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtcttggaca |
20237483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 22131762 - 22131467
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatcc |
117 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||| |||||||||| |||| ||| || |
|
|
| T |
22131762 |
aaaaatgctgcggaacaaatatactcaaagtgtctttcttgcccaaagggtataatttggtacagccactgcttgcttcgctattctgatcggaaattct |
22131663 |
T |
|
| Q |
118 |
tctctaatattgaaacaagtcctatgtatagagatataaatatcactga---ttacaccacaaaccaaaactggttcactagtaccttatcaaatcagtt |
214 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| || || || |||| ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
22131662 |
tctctaacatcgaaacaagtcctatgtatagagatataaatatcaccgaagattccatcacataccaaaactcgttcactagtacattatcaaatcagtt |
22131563 |
T |
|
| Q |
215 |
atctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
22131562 |
atatcaacttgcgaatgacacaggggacagtgatgaaatgtatctgactaattcattaaaactgaatgataaacaaaccttgtatagtcttggaca |
22131467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 24385510 - 24385780
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatcc |
117 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| ||||| ||| ||||| ||| |||||||||||||||||||| ||| |||||| |||| || || |
|
|
| T |
24385510 |
aaaaatgcaactgaccaaatatactcaaagtgtcgttcatctccaaagggtatagtttggtacagccactgcttgcttcactattctgatcggaagttct |
24385609 |
T |
|
| Q |
118 |
tctctaatattgaaacaagtcctatgtatagagatataaatatcac--tgattacaccacaaaccaaaactggttcactagtaccttatcaaatcagtta |
215 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||||||||||||| |||| || |||||||||||||| |||||||| ||| |||| ||||||||| |
|
|
| T |
24385610 |
tctctaacgtcgaaacaagtcctatgtatagcgatataaatatcaccaagattccatcacaaaccaaaacttgttcactaatacattatggaatcagtta |
24385709 |
T |
|
| Q |
216 |
tctcaacttgcgaatgatacaggggacagt--gatgatagatataagactaattcattaaaactgaatgat |
284 |
Q |
| |
|
||||||||| ||||||||||| |||||| | ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
24385710 |
aatcaacttgccaatgatacaggagacagtacggtgaaagatataagactaattcattaaaactaaatgat |
24385780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 18981341 - 18981218
Alignment:
| Q |
174 |
acaaaccaaaactggttcactagtaccttatcaaatcagttatctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaa |
273 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
18981341 |
acaaaccaaaacttgttcactagtgcattatcaaatcaattatctcaacttgcgaatgatacaggggacagtgatgaaatgtatctgactaattcattaa |
18981242 |
T |
|
| Q |
274 |
aactgaatgataaacaaaccttgt |
297 |
Q |
| |
|
|| ||||||||| ||||||||||| |
|
|
| T |
18981241 |
aaatgaatgatacacaaaccttgt |
18981218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 310
Target Start/End: Complemental strand, 18997278 - 18997101
Alignment:
| Q |
127 |
ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcaaatcagttatctcaacttgc |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||| ||||||||| || || || || |||| |||||||| || ||||||| |
|
|
| T |
18997278 |
ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc |
18997185 |
T |
|
| Q |
227 |
gaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|||| || ||| |||||| ||| ||||||| ||||||||||||||||||| ||||| |||||| |||||||| |||| |||| |
|
|
| T |
18997184 |
atatgaaacggggtacagtgttgaaagatatatgactaattcattaaaactgtatgatgaacaaaacttgtatagtcttggaca |
18997101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 21971746 - 21971661
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattc |
103 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||| | || |||| ||||||||||||||||| ||| || |||||||||| |
|
|
| T |
21971746 |
aaaaatgcaacggaacaactatactcaaagtgtcattccttcccagagggtataatttggtacagccattgcctgcttcgctattc |
21971661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 20205022 - 20204900
Alignment:
| Q |
178 |
accaaaactggttcactagtaccttatcaaatcagttatctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaact |
277 |
Q |
| |
|
||||||||| |||||| | | | ||||||||||| ||||| |||||| |||| ||| ||| ||| |||||| | || || ||| |||||||| | | | |
|
|
| T |
20205022 |
accaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatatt |
20204923 |
T |
|
| Q |
278 |
gaatgataaacaaaccttgtata |
300 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
20204922 |
gaatgataaacaaaccttgtata |
20204900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 22099045 - 22098923
Alignment:
| Q |
178 |
accaaaactggttcactagtaccttatcaaatcagttatctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaact |
277 |
Q |
| |
|
||||||||| |||||| | | | ||||||||||| ||||| |||||| |||| ||| ||| ||| |||||| | || || ||| |||||||| | | | |
|
|
| T |
22099045 |
accaaaacttgttcacaaatgcattatcaaatcaattatccgaacttgtcaatgttacggggaacaatgatgaaaaatttacgacaaattcattgatatt |
22098946 |
T |
|
| Q |
278 |
gaatgataaacaaaccttgtata |
300 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22098945 |
gaatgataaacaaaccttgtata |
22098923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5651 - 5946
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
5651 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcacgtcccaagggtataatttggtacagccactgcttggttcgctattcagataataaaatca |
5750 |
T |
|
| Q |
118 |
tctctaatattgaaacaagtcctatgtatagagatataaatatcac---tgattacaccacaaaccaaaactggttcactagtaccttatcaaatcagtt |
214 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||| ||||| ||| |||| |
|
|
| T |
5751 |
tctctaacatggaaacaagtcctatgtatagagatataaatatcaccaaaaattgtagcacaaaccaaaacttgttcactagtacattatccaatgagtt |
5850 |
T |
|
| Q |
215 |
atctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattcttcgaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
5851 |
atctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgatgtacaaaccttgtatagtcttggaca |
5946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 48124 - 48414
Alignment:
| Q |
18 |
aaaaatgcaacggatcaaatatactcaaagtgtctttcatgtcctaagggcataatttggtacagccactgcttggttcgctattcagatcaaaaaatcc |
117 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
48124 |
aaaaaagcaacggaccaaatatactcaaagtgtctttcatctccaaagggtataatttggtacagccactgcttggttcgctattcagataaaataatct |
48223 |
T |
|
| Q |
118 |
tctctaatattgaaacaagtcctatgtatagagatataaatatcac---tgattacaccacaaaccaaaactggttcactagtaccttatcaaatcagtt |
214 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| ||| | |||| | | ||||| |||||||||||| ||||| |||||||| |
|
|
| T |
48224 |
tctctaacatggaaacaagtcctatgtatagagatataaatatcaccaaatattttagcacatatctaaacttgttcactagtacattatcgaatcagtt |
48323 |
T |
|
| Q |
215 |
atctcaacttgcgaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatattctt |
305 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48324 |
atctcaacttgcaaatgatacaggggacagtgatgatagatataagactaattcattaaaactgaatgataaacaaaccttgtatagtctt |
48414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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