View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21357_low_14 (Length: 267)

Name: NF21357_low_14
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21357_low_14
NF21357_low_14
[»] chr3 (21 HSPs)
chr3 (11-166)||(679879-680034)
chr3 (7-164)||(747799-747961)
chr3 (161-254)||(679736-679829)
chr3 (161-254)||(747654-747747)
chr3 (30-164)||(755306-755445)
chr3 (14-164)||(2475887-2476042)
chr3 (14-163)||(9566497-9566651)
chr3 (179-251)||(9562507-9562579)
chr3 (13-164)||(2474346-2474502)
chr3 (179-254)||(2659674-2659749)
chr3 (179-254)||(9595173-9595248)
chr3 (14-164)||(7334945-7335100)
chr3 (103-164)||(9595300-9595361)
chr3 (14-164)||(7325071-7325226)
chr3 (188-242)||(9566378-9566432)
chr3 (189-230)||(2476118-2476159)
chr3 (189-254)||(2630778-2630843)
chr3 (191-251)||(2491527-2491587)
chr3 (188-251)||(755176-755239)
chr3 (129-164)||(9562637-9562672)
chr3 (14-52)||(7443785-7443823)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 680034 - 679879
Alignment:
Q  11 ccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagnnnnnnnattctctt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  680034 ccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattaccaacttcgatgcctctgtaagtttttttattctctt 679935  T
Q  111 attgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679934 attgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccacaa 679879  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 747961 - 747799
Alignment:
Q  7 gccgccacttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnn 101  Q
    ||||||||||||||||||||  ||||||||  |||||||| ||||||||||| |||||||||||||||     |||||||||||||||||||||          
T  747961 gccgccacttcccactcttccattcgatgttttccctgagtttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaagtttttt 747862  T
Q  102 nattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747861 tattctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 747799  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 679736 - 679829
Alignment:
Q  161 ccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679736 ccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 679829  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 747654 - 747747
Alignment:
Q  161 ccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 254  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  747654 ccacaaagttacctcgaattgtaagagtattaggagggtaaagttgtgtatgtgtaacaacgatagaagtagataaaaccgaggggattggaga 747747  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 755445 - 755306
Alignment:
Q  30 tcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctcttattgctgatccaac 124  Q
    |||||||||| |||||||||||  ||||| |||||||||||||||     || || || ||||||||||||       ||||||||||| |||||||||     
T  755445 tcgatgtcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctgatccaaa 755346  T
Q  125 attcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
    ||||||||| || || |||||||| ||||| |||||||||    
T  755345 attcgcaaaaaaacatcttcaattgtcaacaaagcgccac 755306  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 2475887 - 2476042
Alignment:
Q  14 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 108  Q
    ||||||||||||| ||| |||||||| |||||||||||   |||||| ||  |||||||||     || ||||| ||||| ||||||       ||||||    
T  2475887 cttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattctc 2475986  T
Q  109 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||| |||||||||    
T  2475987 ttatttctgatcctaaattcgcaaagaaacaccttcaattgtcaacaaagcgccac 2476042  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 9566651 - 9566497
Alignment:
Q  14 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 108  Q
    ||||| ||||||| |||||||||| | |||||||||||  ||||| ||||||| |||||||     || ||||| |||||||| |||       ||||||    
T  9566651 cttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattctc 9566552  T
Q  109 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgcca 163  Q
    ||||| ||||||||| ||||||||| || || |||||||| ||||| ||||||||    
T  9566551 ttatttctgatccaaaattcgcaaaaaaacatcttcaattgtcaacaaagcgcca 9566497  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 9562507 - 9562579
Alignment:
Q  179 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg 251  Q
    |||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | ||||||||||    
T  9562507 ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgg 9562579  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 2474346 - 2474502
Alignment:
Q  13 acttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattct 107  Q
    |||||||||||||| ||| ||| |||| |||||||||||| ||||| ||||| |||||||||     || ||||| ||||||||||||       |||||    
T  2474346 acttcccactcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattct 2474445  T
Q  108 cttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
     | ||| |  |||| | |||||||||||| ||||||||||||||||  |||||||||    
T  2474446 ttaatttccaatcccagattcgcaaagaaacaccttcaattatcaaacaagcgccac 2474502  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 2659674 - 2659749
Alignment:
Q  179 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 254  Q
    |||| ||| ||||||||  |||||||||||| |||||||||||||||||||| || ||||| || |||||||||||    
T  2659674 ttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaattgaagggattggaga 2659749  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 9595173 - 9595248
Alignment:
Q  179 ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 254  Q
    |||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || ||||  ||| ||||||||||    
T  9595173 ttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattggaga 9595248  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 7335100 - 7334945
Alignment:
Q  14 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 108  Q
    ||||| |||||||  || |||||||| |||||||||||  ||||| ||||  | |||||||     || |||||||| |||||||||       |||||     
T  7335100 cttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattctg 7335001  T
Q  109 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
    ||||  ||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  7335000 ttatctctgatccaaaattcgcaaagaagcaccttcaattgtcaacaaagcgccac 7334945  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 9595361 - 9595300
Alignment:
Q  103 attctcttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||||| ||||| |||||||||    
T  9595361 attctcttatttctgatccaaaatttgcaaagaatcaccttcaattgtcaacaaagcgccac 9595300  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 7325226 - 7325071
Alignment:
Q  14 cttcccactcttctcttcgatgtcctccctgagattctcggtaggtttcccatcaaattac-----caacttcgatgcctctgtaagnnnnnnnattctc 108  Q
    ||||| |||||||  ||||||||| | |||||||||||| | ||| ||||  | |||||||     || ||||| ||||||||||||       |||||     
T  7325226 cttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctgtgaaattactcatacagcttcggtgcctctgtaagttcttcaattctt 7325127  T
Q  109 ttattgctgatccaacattcgcaaagaagcaccttcaattatcaactaagcgccac 164  Q
    | ||| ||||||| || ||||||||||| || ||||||||||||||||||||||||    
T  7325126 taatttctgatcccactttcgcaaagaaacatcttcaattatcaactaagcgccac 7325071  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 9566378 - 9566432
Alignment:
Q  188 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcga 242  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| |||||||||||    
T  9566378 tattgggagggtaaagttgtgtctgtgtaaaaaccgtagaagtagataaaatcga 9566432  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 2476159 - 2476118
Alignment:
Q  189 attaggagggtaaagttgtgtatgtgtaacaacggtagaagt 230  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  2476159 attaggagggtaaagttgtgtctgtgtaacaacggttgaagt 2476118  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 2630843 - 2630778
Alignment:
Q  189 attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattggaga 254  Q
    ||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| |||||||||||    
T  2630843 attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattggaga 2630778  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 2491587 - 2491527
Alignment:
Q  191 taggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg 251  Q
    |||||||||||||||| || ||||||| |||||||||||| || |||| |||||| |||||    
T  2491587 taggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattgg 2491527  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 755176 - 755239
Alignment:
Q  188 tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg 251  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || ||||||||    
T  755176 tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattgg 755239  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 9562672 - 9562637
Alignment:
Q  129 gcaaagaagcaccttcaattatcaactaagcgccac 164  Q
    |||||||||||||||||||| |||||||||||||||    
T  9562672 gcaaagaagcaccttcaattgtcaactaagcgccac 9562637  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 7443823 - 7443785
Alignment:
Q  14 cttcccactcttctcttcgatgtcctccctgagattctc 52  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  7443823 cttcccactcttcccttcgatctcctccctgagattctc 7443785  T

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