View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21357_low_15 (Length: 250)
Name: NF21357_low_15
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24033682 - 24033459
Alignment:
| Q |
1 |
ccattttattcttctaaagtcttaatgcgttaatcagagacactgtgttccatttcttacttatatataaccaagtctttggtgcatttgttcgcatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24033682 |
ccattttattcttctaaagtcttaatgcgttaatcagagacactgtgttccatttcttacttatatataaccaagtctttggtgcatttgttcgcatatc |
24033583 |
T |
|
| Q |
101 |
ttccaaaccatacattcttcattttttgcattctattccttaattcttgatacacaatgcacaaatcttaaaaaagccataattttaaaccatgcctttc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24033582 |
ttccaaaccatacattcttcattttttacattctattccttaattcttgatacacaatgcacaaatcttataaaagccataattttaaaccatgcctttc |
24033483 |
T |
|
| Q |
201 |
tcatccaaattacctttgattatg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
24033482 |
tcatccaaattacctttgattatg |
24033459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24039145 - 24038924
Alignment:
| Q |
1 |
ccattttattcttctaaagtcttaatgcgttaatcagagacactgtgttccatttcttacttatatataaccaagtctttggtgcatttgttcgcata-- |
98 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||| | | |||| |
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| T |
24039145 |
ccattttattcttctaaattcttaatgcgttaatcagagacactgtgttccatttcttacttatatataaccatgt-tttggtgccttt-tacacatagt |
24039048 |
T |
|
| Q |
99 |
tcttccaaaccatacattcttcattttttgcattctattccttaattcttgatacacaatgcacaaatcttaaaaaagccataattttaaaccatgcctt |
198 |
Q |
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| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
24039047 |
tgttcgcat--atacattcttcattttttacattctattccttaattcttgatacacaatacacaaatcttataaaagccagaattttaaaccatgcctt |
24038950 |
T |
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| Q |
199 |
tctcatccaaattacctttgattatg |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
24038949 |
tctcatccaaattacctttgattatg |
24038924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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