View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21357_low_16 (Length: 235)
Name: NF21357_low_16
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_16 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 23187597 - 23187366
Alignment:
| Q |
1 |
aggtagtggtggttagagaaacaaaacaaaagaaggttagaagttcattttctcaaattctcannnnnnnnnnnnngtatatattcttgcactctaattt |
100 |
Q |
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| T |
23187597 |
aggtagtgatggttagagaaacaaaacaaaagaaggttagaagttcattttctcaaattctcatttttttttt---gtatatattcttgcactctaattt |
23187501 |
T |
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| Q |
101 |
atatattaatccttatataatgtttacaaaattgaaatgaaaaagaaggtaagaggtggtgcaattatggaaggttcgcggtgcagtcgagttaatggaa |
200 |
Q |
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| T |
23187500 |
atatattaatccttatataatgtttacaaaattgaaataaaaaagaaggtaagaggtggtgcacttatggaaggttcgcggtgcagtcgagttaatggaa |
23187401 |
T |
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| Q |
201 |
gaggatggagatgttgtcaaccaaccctagttggt |
235 |
Q |
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| T |
23187400 |
gaggatggaggtgttgtcaacaaaccctagttggt |
23187366 |
T |
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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 37090856 - 37090788
Alignment:
| Q |
167 |
atggaaggttcgcggtgcagtcgagttaatggaagaggatggagatgttgtcaaccaaccctagttggt |
235 |
Q |
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| T |
37090856 |
atggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt |
37090788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 37097223 - 37097155
Alignment:
| Q |
167 |
atggaaggttcgcggtgcagtcgagttaatggaagaggatggagatgttgtcaaccaaccctagttggt |
235 |
Q |
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| T |
37097223 |
atggaaggttcaaggtgcagtcgtgttaatggaagaggatggagatgttgtcaacaaacacttgttggt |
37097155 |
T |
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