View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21357_low_3 (Length: 513)
Name: NF21357_low_3
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 34593246 - 34592966
Alignment:
| Q |
16 |
ctaattgctatcaagttggatgccaacaagaatgacaatatgctctcattagttgacaccaaagcagaaaccatgcatggaaacaccaagctaatctcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34593246 |
ctaattgctatcaagttggatgccaacaagaatgacaatatgctctcattagttgataccaaagcagaaaccatgcatggaaacaccaagctaatctcaa |
34593147 |
T |
|
| Q |
116 |
gaaaactgtaaagactaaatcaacaaacggcttattaaagaactaataaagcaacatagataggataacaacgtgaattaactacaaattcaaagtttga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34593146 |
gaaaactgtaaagactaaatcaacaaacggcttattaaagaactaataaagcaac----ataggataacaacgtgaattaactacaaattcaaagtttga |
34593051 |
T |
|
| Q |
216 |
cttcaacagataaagaagtgcagcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttttgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34593050 |
cttcaacagataaagaagtgcagcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttttgta |
34592966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 38 - 453
Target Start/End: Complemental strand, 38609693 - 38609246
Alignment:
| Q |
38 |
ccaacaagaatgacaatatgctctcatta--gttgacaccaaagcagaaaccatgcatggaaacaccaagctaatctcaagaaaactgtaaagactaaat |
135 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38609693 |
ccaacaagaatgacaatgtgctctcattatagttgacaccaaagcagaaaccatgcatggaaacaccaagataatctcaagaaaactgtaaagactaaat |
38609594 |
T |
|
| Q |
136 |
caacaaacggcttattaaagaactaataaagcaacatag----atag-----gataacaacgtgaattaactacaaattcaaagtttgacttcaacagat |
226 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| || | || |||||||| |||||||||||||||||||||||||| ||||||| || |
|
|
| T |
38609593 |
caacaaacggtttattaaagaactaataaaacaacaaagccacaaagcctttgataacaatgtgaattaactacaaattcaaagtttcacttcaatggag |
38609494 |
T |
|
| Q |
227 |
aaagaagtgcagcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttttgtacatgaacaacag------tgtaaact |
320 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
38609493 |
aaagaagcgcagcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaact |
38609394 |
T |
|
| Q |
321 |
tattaactacaaatttcat------------------agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcgcactcacaggccatggtg |
402 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38609393 |
tattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtg |
38609297 |
T |
|
| Q |
403 |
atcttcaatctcaaccattggcctgacccgaggcatgggagacacacctgc |
453 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
38609296 |
atcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgc |
38609246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 38 - 453
Target Start/End: Complemental strand, 38794477 - 38794029
Alignment:
| Q |
38 |
ccaacaagaatgacaatatgctctcatta--gttgacaccaaagcagaaaccatgcatggaaacaccaagctaatctcaagaaaactgtaaagactaaat |
135 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38794477 |
ccaacaagaatgacaatgtgctctcattatagttgacaccaaagcagaaaccatgcatggaaacaccaagataatctcaagaaaactgtaaagactaaat |
38794378 |
T |
|
| Q |
136 |
caacaaacggcttattaaagaactaa-taaagcaacatag----atag-----gataacaacgtgaattaactacaaattcaaagtttgacttcaacaga |
225 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||| || | || |||||||| |||||||||||||||||||||||||| |||||||| || |
|
|
| T |
38794377 |
caacaaacggtttattaaagaactaaataaaacaacaaagccacaaagcctttgataacaatgtgaattaactacaaattcaaagtttcacttcaacgga |
38794278 |
T |
|
| Q |
226 |
taaagaagtgcagcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttttgtacatgaacaacagt------gtaaac |
319 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
38794277 |
gaaagaagcgcagcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcactttagtacatgaacaacagtgtaactgtaaac |
38794178 |
T |
|
| Q |
320 |
ttattaactacaaatttcat------------------agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcgcactcacaggccatggt |
401 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38794177 |
ttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggt |
38794081 |
T |
|
| Q |
402 |
gatcttcaatctcaaccattggcctgacccgaggcatgggagacacacctgc |
453 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
38794080 |
gatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgc |
38794029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 331 - 497
Target Start/End: Complemental strand, 34592966 - 34592800
Alignment:
| Q |
331 |
aaatttcatagaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcctgacc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34592966 |
aaatttcatagaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacc |
34592867 |
T |
|
| Q |
431 |
cgaggcatgggagacacacctgcggcattgtgatcttcaattccagcatttatagccaagtcattaa |
497 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34592866 |
cgaggcacgggagacacacctgcggcatggtgatcttcaattccagcatttatagccaagtcattaa |
34592800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 340 - 453
Target Start/End: Original strand, 38120764 - 38120877
Alignment:
| Q |
340 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcatg |
439 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38120764 |
agaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacctgaggcatg |
38120863 |
T |
|
| Q |
440 |
ggagacacacctgc |
453 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38120864 |
ggagacacacctgc |
38120877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 38120519 - 38120667
Alignment:
| Q |
102 |
caagctaatctcaagaaaa-ctgtaaagactaaatcaacaaacggctt-attaaagaactaataaagcaacataga----taggataacaacgtgaatta |
195 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||||| ||||| | || ||| |||||||| | ||||||||||| | |||||| | |||||||| |
|
|
| T |
38120519 |
caagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagttggataatagtgtgaatta |
38120618 |
T |
|
| Q |
196 |
actacaaattcaaagtttgacttcaacagataaagaagtgcagcacaaa |
244 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
38120619 |
actacaaattcaaagtttcacttcatgagacaaagaagtgcagcacaaa |
38120667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 38120712 - 38120748
Alignment:
| Q |
306 |
acaacagtgtaaacttattaactacaaatttcataga |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38120712 |
acaacagtgtaaacttattaactacaaatttcataga |
38120748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 100 - 411
Target Start/End: Complemental strand, 33078770 - 33078483
Alignment:
| Q |
100 |
accaagctaatctcaagaaaactgtaaagactaaatcaacaaacggcttattaaagaactaataaagcaacatagataggataacaacgtgaattaacta |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33078770 |
accaagataatctcaagaaaactgtaaagactaaatcaacaaacggtttattaaagaactaataaagcaacatag----gataacaacgtgaattaact- |
33078676 |
T |
|
| Q |
200 |
caaattcaaagtttgacttcaacagataaagaagtgcagcacaaagccacaaactaaacaacaatgcaagttaactacaaattcagagtttcacttttgt |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33078675 |
------------------tcaacagataaagaagtg-agcacaaagccacaaactaaacaacaatgcgagttaactacaaattcagagtttcacttttgt |
33078595 |
T |
|
| Q |
300 |
acatgaacaacagtgtaaacttattaactacaaatttcatagaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcgcactcacaggccatg |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
33078594 |
acatgaacaacagtgtaaacttattaactacaaatttcagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatg |
33078495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 340 - 452
Target Start/End: Original strand, 28730341 - 28730450
Alignment:
| Q |
340 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcatg |
439 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||| || |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
28730341 |
agaaagaagtaaatcgcaatcttcgtcatgatca---aaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatg |
28730437 |
T |
|
| Q |
440 |
ggagacacacctg |
452 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28730438 |
ggagacacacctg |
28730450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 28730101 - 28730244
Alignment:
| Q |
102 |
caagctaatctcaagaaaa-ctgtaaagactaaatcaacaaacggcttattaaagaactaataaagcaacataga-----ta-ggataacaacgtgaatt |
194 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||| ||| ||||||| |||||| | |||||||||||| || |||||| | ||||||| |
|
|
| T |
28730101 |
caagataatctcaagaaaatctgtaaagactaaatccaca------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaatt |
28730194 |
T |
|
| Q |
195 |
aactacaaattcaaagtttgacttcaacagataaagaagtgcagcacaaa |
244 |
Q |
| |
|
||||||||||||| ||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
28730195 |
aactacaaattcagagtttcacttcatgagacaaagaagtgcagcacaaa |
28730244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 33078817 - 33078772
Alignment:
| Q |
16 |
ctaattgctatcaagttggatgccaacaagaatgacaatatgctct |
61 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
33078817 |
ctaattgctagcaagttggatgccaacaagaatgacaatgtgctct |
33078772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 28730285 - 28730323
Alignment:
| Q |
302 |
atgaacaacagtgtaaacttattaactacaaatttcata |
340 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28730285 |
atgaacaacggtgtaaacttattaactacaaatttcata |
28730323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 33078494 - 33078457
Alignment:
| Q |
460 |
gtgatcttcaattccagcatttatagccaagtcattaa |
497 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33078494 |
gtgatcttcaattccagcatttataaccaagtcattaa |
33078457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University