View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21357_low_4 (Length: 510)
Name: NF21357_low_4
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_4 |
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| [»] scaffold0308 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 40560881 - 40561251
Alignment:
| Q |
17 |
atgaaagtggtttgagtttttctagtttcgttcaccagatttatagttttgggtcaattgaaccggtttttatacacacccttaccaccaagaatcttcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||| |
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| T |
40560881 |
atgaaagtggtttgagtttttctagtttcgttcaccagatttacagttttggatcaattgaaccagtttttatacacacccctaccacaaagaatcttcg |
40560980 |
T |
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| Q |
117 |
tggaatccctcatagaagttacaccaacaagaacagaaaatgcagtagcatccttatcagcactaccaaatccacttcgaatccccccacacatacataa |
216 |
Q |
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| T |
40560981 |
tggaatccctcatagaagttacatcaacaagaacagaaaatgcagtagcatccttgtcagcactaccaaatccacttc--at-cccccacacatacatat |
40561077 |
T |
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| Q |
217 |
ttttcttctatcaaccatagataatgttgaaaacataaactaatcttcttcttaaaagattgagacattgactgccacatnnnnnnntctggtcaatcta |
316 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40561078 |
ttttcttccatcaacgatagataatgttgaaaacataaactaatattcttcttaaaagattgagacattgactgccacataaaaaaatctggtcaatcta |
40561177 |
T |
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| Q |
317 |
annnnnnnnggaaagg-aaaaatatttattcaaccttcatgttaaaggtagattggcggctggtcaagacaaac |
389 |
Q |
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| T |
40561178 |
attttctttggaaaggaaaaaatatttattcaaccttactgttaaaggtagattggcggctggtcaagacaaac |
40561251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 495
Target Start/End: Original strand, 40561316 - 40561357
Alignment:
| Q |
454 |
gtggaatttgagttaaaaaagcacatatgtctattttgtttc |
495 |
Q |
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| T |
40561316 |
gtggaatttgagttaaaaaagcacatatgtctattttgtttc |
40561357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 6673145 - 6673086
Alignment:
| Q |
209 |
atacataattttcttctatcaaccatagataat--gttgaaaacataaactaatcttctt |
266 |
Q |
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| T |
6673145 |
atacatatttttcttcaatcaacaataaataatatgttgaaaacataaactaaccttctt |
6673086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 16680066 - 16680018
Alignment:
| Q |
17 |
atgaaagtggtttgagtttttctagtttcgttcaccagatttatagttt |
65 |
Q |
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| T |
16680066 |
atgaaagtggattgggcttttctagtttggttcaccagatttatagttt |
16680018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 49127107 - 49127056
Alignment:
| Q |
217 |
ttttcttctatcaaccatagataa--tgttgaaaacataaactaatcttctt |
266 |
Q |
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| T |
49127107 |
ttttcttcaatcaacaataaataacatgttgaaaacataaactaatcttctt |
49127056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 5203 - 5133
Alignment:
| Q |
209 |
atacataattttcttctatcaaccatagataa--tgttgaaaacataaactaatcttc-ttcttaaaagat |
276 |
Q |
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| T |
5203 |
atacatatttttcttcaatcaacaataaataacatgttgaaaacataaactaaccttctttcttaaaagat |
5133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 14266 - 14196
Alignment:
| Q |
209 |
atacataattttcttctatcaaccatagataa--tgttgaaaacataaactaatcttc-ttcttaaaagat |
276 |
Q |
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| T |
14266 |
atacatatttttcttcaatcaacaataaataacatgttgaaaacataaactaaccttctttcttaaaagat |
14196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 26255215 - 26255274
Alignment:
| Q |
209 |
atacataattttcttctatcaaccatagataa--tgttgaaaacataaactaatcttctt |
266 |
Q |
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| T |
26255215 |
atacatatttttcttcaatcaacaataaataacatgttgaaaacataaactaaccttctt |
26255274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 47806988 - 47807039
Alignment:
| Q |
217 |
ttttcttctatcaaccatagataa--tgttgaaaacataaactaatcttctt |
266 |
Q |
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|||||||| |||||| ||| |||| |||||||||||||||||||||||||| |
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| T |
47806988 |
ttttcttcaatcaacaataaataacatgttgaaaacataaactaatcttctt |
47807039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 16456756 - 16456815
Alignment:
| Q |
209 |
atacataattttcttctatcaaccatagata--atgttgaaaacataaactaatcttctt |
266 |
Q |
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| T |
16456756 |
atacataattttcttcaatcagcaataaatatcatgttgaaaacataaactaaccttctt |
16456815 |
T |
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