View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21357_low_5 (Length: 491)
Name: NF21357_low_5
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 24429314 - 24429460
Alignment:
| Q |
328 |
aactcacgaaatacatagaaactcaggaaaagatatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatatt |
427 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24429314 |
aactcaggaaatacatagaaactcagaaaaagacatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatatt |
24429413 |
T |
|
| Q |
428 |
gtacgataggagacaagaaatcaaggaaaacaattacacataaaact |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24429414 |
gtacgataggagacaagaaatcaaggaaaacaattacacataaaact |
24429460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 24434264 - 24434410
Alignment:
| Q |
328 |
aactcacgaaatacatagaaactcaggaaaagatatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatatt |
427 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
24434264 |
aactcaggaaatacatagaaactcaggaaaagacatggagaaatatgtttgtatatttactgaaagctctcaattacaataagatgctcctatatatatt |
24434363 |
T |
|
| Q |
428 |
gtacgataggagacaagaaatcaaggaaaacaattacacataaaact |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24434364 |
gtacgataggagacaagaaatcaaggaaaacaattacacataaaact |
24434410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 343 - 474
Target Start/End: Original strand, 17448569 - 17448700
Alignment:
| Q |
343 |
tagaaactcaggaaaagatatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatattgtacgataggagaca |
442 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17448569 |
tagaaactcaggaaaagacatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatattgtacgataggagaca |
17448668 |
T |
|
| Q |
443 |
agaaatcaaggaaaacaattacacataaaact |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17448669 |
agaaatcaaggaaaacaattacacataaaact |
17448700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 343 - 474
Target Start/End: Original strand, 17453304 - 17453435
Alignment:
| Q |
343 |
tagaaactcaggaaaagatatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatattgtacgataggagaca |
442 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17453304 |
tagaaactcaggaaaagacatgaagaaatatgtttgtatatttaccgaatgctctcaattacaataaggtgctcctatatatattgtaggataggagaca |
17453403 |
T |
|
| Q |
443 |
agaaatcaaggaaaacaattacacataaaact |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17453404 |
agaaatcaaggaaaacaattacacataaaact |
17453435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 328 - 474
Target Start/End: Original strand, 40770128 - 40770274
Alignment:
| Q |
328 |
aactcacgaaatacatagaaactcaggaaaagatatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatatt |
427 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
40770128 |
aactcaggaaatacatagaaactcaggaaaagacatggaaaaatatgtttgtatatttactgaatgccctcaattacaataagctgctcctatatatatt |
40770227 |
T |
|
| Q |
428 |
gtacgataggagacaagaaatcaaggaaaacaattacacataaaact |
474 |
Q |
| |
|
||| ||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
40770228 |
gtaagataggagacaagaattcaaggaaaataattacacataaaact |
40770274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 362 - 474
Target Start/End: Original strand, 1048434 - 1048552
Alignment:
| Q |
362 |
atggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcc------tatatatattgtacgataggagacaagaaatcaaggaa |
455 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
1048434 |
atggaggaaaatgtttgtatatttaccgaatgctctcaataacaaaaaggtgctcctatatatatatatattgtaggataggagataagaaatcaaggaa |
1048533 |
T |
|
| Q |
456 |
aacaattacacataaaact |
474 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
1048534 |
aataattacacataaaact |
1048552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 328 - 472
Target Start/End: Complemental strand, 34045707 - 34045563
Alignment:
| Q |
328 |
aactcacgaaatacatagaaactcaggaaaagatatggagaaatatgtttgtatatttactgaatgctctcaattacaataaggtgctcctatatatatt |
427 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34045707 |
aactcaggaaatacatagaaactcaggaaaagacatgaagaaatatgtttgtatatttactgaatgccttcaattataataaggtgctcctatatatatt |
34045608 |
T |
|
| Q |
428 |
gtacgataggagacaagaaatcaaggaaaacaattacacataaaa |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
34045607 |
gtacgataggagacaagaaatcaaggaaaacaattataaataaaa |
34045563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University