View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21357_low_6 (Length: 402)

Name: NF21357_low_6
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21357_low_6
NF21357_low_6
[»] chr8 (33 HSPs)
chr8 (221-369)||(39323837-39323986)
chr8 (214-368)||(13514783-13514938)
chr8 (214-368)||(13604316-13604471)
chr8 (226-369)||(44102004-44102148)
chr8 (214-288)||(13513463-13513537)
chr8 (214-288)||(13602996-13603070)
chr8 (216-294)||(44103289-44103367)
chr8 (214-294)||(21670107-21670187)
chr8 (218-334)||(16362466-16362583)
chr8 (225-294)||(21961877-21961946)
chr8 (225-366)||(40251276-40251418)
chr8 (271-368)||(36939951-36940049)
chr8 (214-295)||(10053736-10053817)
chr8 (275-347)||(42793806-42793879)
chr8 (214-294)||(13363571-13363653)
chr8 (226-280)||(15116864-15116918)
chr8 (215-283)||(39325838-39325906)
chr8 (274-347)||(7770100-7770174)
chr8 (274-347)||(7777777-7777851)
chr8 (215-281)||(13360397-13360463)
chr8 (271-340)||(37274987-37275057)
chr8 (233-294)||(10052166-10052227)
chr8 (228-297)||(38664426-38664495)
chr8 (274-347)||(7795869-7795944)
chr8 (238-310)||(44607293-44607365)
chr8 (241-347)||(38055-38161)
chr8 (307-370)||(21671263-21671326)
chr8 (277-347)||(39516436-39516507)
chr8 (274-347)||(22621073-22621147)
chr8 (277-342)||(36757164-36757230)
chr8 (273-370)||(37473952-37474050)
chr8 (216-295)||(2419919-2419999)
chr8 (274-347)||(7815146-7815221)
[»] chr7 (23 HSPs)
chr7 (16-165)||(22295347-22295498)
chr7 (216-294)||(24495044-24495122)
chr7 (216-294)||(44113474-44113552)
chr7 (214-364)||(35483617-35483768)
chr7 (214-367)||(43111472-43111630)
chr7 (214-292)||(41126282-41126360)
chr7 (221-344)||(26407344-26407469)
chr7 (234-298)||(44114645-44114709)
chr7 (214-288)||(2904046-2904120)
chr7 (214-288)||(30223975-30224049)
chr7 (214-288)||(36673835-36673909)
chr7 (274-340)||(28326336-28326403)
chr7 (234-288)||(30222709-30222763)
chr7 (280-349)||(35296752-35296822)
chr7 (214-294)||(49162280-49162360)
chr7 (281-347)||(17288181-17288248)
chr7 (216-283)||(24494030-24494097)
chr7 (271-310)||(40926496-40926535)
chr7 (274-340)||(41515099-41515166)
chr7 (228-294)||(18668820-18668886)
chr7 (234-288)||(34558300-34558354)
chr7 (233-310)||(38408251-38408328)
chr7 (273-340)||(13446604-13446672)
[»] scaffold0084 (1 HSPs)
scaffold0084 (236-373)||(11771-11909)
[»] chr6 (9 HSPs)
chr6 (214-372)||(18773697-18773856)
chr6 (233-288)||(19368517-19368572)
chr6 (214-288)||(8447264-8447338)
chr6 (214-288)||(8456068-8456142)
chr6 (214-347)||(13279400-13279533)
chr6 (268-343)||(27438887-27438963)
chr6 (271-310)||(33807789-33807828)
chr6 (214-288)||(2138636-2138710)
chr6 (214-288)||(13173080-13173153)
[»] chr1 (31 HSPs)
chr1 (214-358)||(51217661-51217806)
chr1 (218-369)||(34654257-34654409)
chr1 (214-294)||(51218959-51219039)
chr1 (214-294)||(27689325-27689406)
chr1 (275-347)||(40533540-40533613)
chr1 (233-288)||(25889491-25889546)
chr1 (214-288)||(35683098-35683172)
chr1 (214-294)||(9415667-9415747)
chr1 (214-294)||(30551582-30551662)
chr1 (214-294)||(37624563-37624643)
chr1 (214-288)||(2237977-2238051)
chr1 (214-288)||(48935109-48935183)
chr1 (221-286)||(34531713-34531778)
chr1 (214-294)||(22766813-22766893)
chr1 (214-294)||(23082119-23082199)
chr1 (233-288)||(35684202-35684257)
chr1 (214-288)||(2236856-2236930)
chr1 (274-347)||(40110591-40110665)
chr1 (242-310)||(9417074-9417142)
chr1 (273-347)||(12667211-12667286)
chr1 (281-340)||(26287719-26287778)
chr1 (221-295)||(27690621-27690695)
chr1 (228-294)||(29001115-29001181)
chr1 (214-359)||(50679748-50679894)
chr1 (215-288)||(1061451-1061524)
chr1 (214-279)||(46127832-46127897)
chr1 (272-347)||(48528832-48528909)
chr1 (216-295)||(22169210-22169290)
chr1 (214-294)||(44977264-44977344)
chr1 (271-319)||(47560239-47560287)
chr1 (281-324)||(51446802-51446846)
[»] chr3 (37 HSPs)
chr3 (214-373)||(17345354-17345513)
chr3 (214-294)||(7483518-7483598)
chr3 (233-359)||(7921570-7921697)
chr3 (216-294)||(17350095-17350173)
chr3 (221-370)||(26797369-26797519)
chr3 (223-296)||(7483161-7483234)
chr3 (226-294)||(31638173-31638241)
chr3 (225-334)||(31638603-31638712)
chr3 (214-288)||(32973182-32973256)
chr3 (214-288)||(32974222-32974296)
chr3 (214-288)||(48035323-48035397)
chr3 (214-288)||(53047940-53048014)
chr3 (214-288)||(53049036-53049110)
chr3 (214-294)||(39133060-39133140)
chr3 (280-347)||(53809432-53809500)
chr3 (281-340)||(54750389-54750448)
chr3 (214-288)||(52293522-52293596)
chr3 (214-294)||(34902987-34903067)
chr3 (271-334)||(32980404-32980468)
chr3 (280-347)||(48253042-48253110)
chr3 (233-288)||(7583532-7583587)
chr3 (233-288)||(11481963-11482018)
chr3 (215-278)||(34901696-34901759)
chr3 (233-288)||(39287532-39287587)
chr3 (214-280)||(1301075-1301141)
chr3 (214-288)||(5416241-5416315)
chr3 (214-288)||(5417047-5417121)
chr3 (280-325)||(14744175-14744221)
chr3 (229-334)||(25585785-25585891)
chr3 (214-295)||(27234688-27234770)
chr3 (272-373)||(46496737-46496839)
chr3 (214-275)||(19579306-19579367)
chr3 (233-310)||(19622896-19622973)
chr3 (221-294)||(40501858-40501931)
chr3 (271-334)||(8372568-8372632)
chr3 (214-294)||(25583157-25583237)
chr3 (276-347)||(47766890-47766962)
[»] scaffold0046 (1 HSPs)
scaffold0046 (236-373)||(24728-24866)
[»] chr2 (21 HSPs)
chr2 (246-370)||(14716111-14716236)
chr2 (221-370)||(4513669-4513819)
chr2 (216-294)||(26205058-26205136)
chr2 (218-370)||(4830591-4830744)
chr2 (214-294)||(4512149-4512229)
chr2 (264-370)||(26205963-26206070)
chr2 (215-294)||(14714536-14714615)
chr2 (216-288)||(2305585-2305657)
chr2 (214-294)||(41296447-41296527)
chr2 (221-268)||(37982741-37982788)
chr2 (214-288)||(4630083-4630157)
chr2 (214-326)||(8538584-8538698)
chr2 (234-288)||(41312563-41312617)
chr2 (214-310)||(15850155-15850251)
chr2 (233-288)||(2306660-2306715)
chr2 (220-294)||(8537061-8537135)
chr2 (282-347)||(19397644-19397710)
chr2 (214-288)||(33836812-33836886)
chr2 (214-310)||(36422698-36422795)
chr2 (157-185)||(12958403-12958431)
chr2 (215-295)||(41295149-41295229)
[»] chr4 (22 HSPs)
chr4 (214-369)||(2292193-2292349)
chr4 (214-307)||(36604822-36604914)
chr4 (271-373)||(43895530-43895633)
chr4 (214-295)||(29686299-29686380)
chr4 (214-294)||(2293518-2293598)
chr4 (214-368)||(43418076-43418231)
chr4 (214-347)||(46795965-46796099)
chr4 (214-296)||(36604483-36604565)
chr4 (214-288)||(526718-526792)
chr4 (214-287)||(18358373-18358446)
chr4 (229-298)||(44160400-44160469)
chr4 (274-347)||(56001208-56001281)
chr4 (280-347)||(29665513-29665581)
chr4 (216-346)||(38371745-38371876)
chr4 (214-288)||(2310781-2310855)
chr4 (271-310)||(15787479-15787518)
chr4 (233-347)||(47667240-47667355)
chr4 (214-288)||(29833415-29833489)
chr4 (233-283)||(30672068-30672118)
chr4 (214-288)||(52880857-52880931)
chr4 (276-347)||(3528295-3528367)
chr4 (233-265)||(52980102-52980134)
[»] chr5 (22 HSPs)
chr5 (214-310)||(12829613-12829709)
chr5 (214-310)||(12861592-12861688)
chr5 (214-333)||(41905218-41905338)
chr5 (214-294)||(41906391-41906471)
chr5 (274-340)||(8188146-8188213)
chr5 (214-288)||(15509238-15509312)
chr5 (214-288)||(20988733-20988807)
chr5 (233-340)||(5975818-5975926)
chr5 (272-347)||(10736874-10736950)
chr5 (216-288)||(15510262-15510334)
chr5 (214-288)||(22650627-22650701)
chr5 (214-334)||(1273132-1273253)
chr5 (271-334)||(5384298-5384362)
chr5 (214-294)||(14210186-14210266)
chr5 (219-303)||(22818208-22818292)
chr5 (216-259)||(2166156-2166199)
chr5 (221-359)||(14212118-14212256)
chr5 (221-288)||(20991648-20991715)
chr5 (214-288)||(4567973-4568047)
chr5 (216-288)||(4566996-4567068)
chr5 (214-294)||(18693741-18693821)
chr5 (214-294)||(21387680-21387760)
[»] scaffold0015 (1 HSPs)
scaffold0015 (225-294)||(207791-207860)
[»] scaffold0024 (1 HSPs)
scaffold0024 (237-343)||(72929-73036)
[»] scaffold0177 (1 HSPs)
scaffold0177 (233-288)||(1817-1872)
[»] scaffold0002 (1 HSPs)
scaffold0002 (241-288)||(458459-458506)
[»] scaffold0003 (1 HSPs)
scaffold0003 (268-343)||(48399-48475)
[»] scaffold0051 (1 HSPs)
scaffold0051 (271-329)||(22227-22286)
[»] scaffold0155 (1 HSPs)
scaffold0155 (214-288)||(5212-5286)
[»] scaffold0687 (1 HSPs)
scaffold0687 (274-347)||(6502-6577)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 221 - 369
Target Start/End: Original strand, 39323837 - 39323986
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgatt 319  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| ||||||||| |||    
T  39323837 taactaaaaaacgtctcaaattgatctcttatgtcttcttccgttacctcttttggtcctctccgttagtttttcaagatctaatatttttgatataatt 39323936  T
Q  320 ttaaccattggattggatgtctattgtacacaacaatgaaacaccaacac 369  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  39323937 ttaaccattagattgcatgtctattgtatacaacaatgaaacaccaacac 39323986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 368
Target Start/End: Complemental strand, 13514938 - 13514783
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaat-attttga 312  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||  ||||||    
T  13514938 ggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagttttttaatgactaatgtttttga 13514839  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaaca 368  Q
    ||| |||| ||||||| ||||| |||||||||||| ||||||||||  ||||||||    
T  13514838 tataatttaaaccattcgattgcatgtctattgtatacaacaatgagccaccaaca 13514783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 368
Target Start/End: Complemental strand, 13604471 - 13604316
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaat-attttga 312  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||  ||||||    
T  13604471 ggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgttagttttttaatgactaatgtttttga 13604372  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaaca 368  Q
    ||| |||| ||||||| ||||| |||||||||||| ||||||||||  ||||||||    
T  13604371 tataatttaaaccattcgattgcatgtctattgtatacaacaatgagccaccaaca 13604316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 44102004 - 44102148
Alignment:
Q  226 aaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaac 324  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||  |||||| |||| |||| || | |||    
T  44102004 aaaaaacgtctcaaattggtctcttatgtcttcttccgttacctcttttggtcctctctgttagttttttaatgactaatattttttatataatctcaac 44102103  T
Q  325 cattggattggatgtctattgtacacaacaatgaaacaccaacac 369  Q
    |||||||||| |||||||||||  ||||||||||  |||||||||    
T  44102104 cattggattgcatgtctattgtgtacaacaatgagccaccaacac 44102148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 13513463 - 13513537
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13513463 ggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgtta 13513537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 13602996 - 13603070
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13602996 ggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgtta 13603070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 44103367 - 44103289
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||    
T  44103367 tcccctaactaaaaaacgtctcaaattggtctcttatgtcttcttccgtttcctcttttggtcctctccgttagttttt 44103289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 21670107 - 21670187
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||    
T  21670107 ggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcttttggtcttctccgttagttttt 21670187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 16362466 - 16362583
Alignment:
Q  218 ccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatg 316  Q
    ||||||||| ||||||| |||| |||||||||||| |||||  | ||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  16362466 ccttaactataaaacgtttcaatttggtctcttatatcttccaccgttacatcttttggtcctctccgttagttttttaatgtctaatatttttgatatg 16362565  T
Q  317 attttaaccattggattg 334  Q
    |||| |||| || |||||    
T  16362566 atttcaaccgttcgattg 16362583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 21961877 - 21961946
Alignment:
Q  225 taaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||| |||||    
T  21961877 taaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgttagttttt 21961946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 366
Target Start/End: Complemental strand, 40251418 - 40251276
Alignment:
Q  225 taaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaa 323  Q
    |||||||||||||||| |  || ||||||| || |  |||||| | |||||||||||||  ||||||||||||| ||||||| |||||||||||||| ||    
T  40251418 taaaaaacgtctcaaactcatcccttatgtattatattgttacgtattttggtcctctcaattaattttttaatgtctaatatttttgatatgatttcaa 40251319  T
Q  324 ccattggattggatgtctattgtacacaacaatgaaacaccaa 366  Q
    |||||  |||| | |||||||||  |||||| |||| ||||||    
T  40251318 ccattcaattgcaggtctattgtgtacaacactgaaccaccaa 40251276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 36940049 - 36939951
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaat-attttgatatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaaca 368  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| | ||| |||||| | || | |||| ||||||||    
T  36940049 ttttggtcatctccgttaattttttaatatctaataattttgatatggtttcaaccattcgattgcaggtccattgtatataatagtgaaccaccaaca 36939951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 10053817 - 10053736
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    ||||||||||||| |||  ||||||| |||||| |||||||||| |   ||||||||||||||| |||||||||||||||||    
T  10053817 ggtcccttaactataaagtgtctcaagttggtcccttatgtcttatgtcgttacctcttttggttctctccgttaatttttt 10053736  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 42793806 - 42793879
Alignment:
Q  275 ggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||| ||| |||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||| ||||||    
T  42793806 ggtcccctctgttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgta 42793879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 13363653 - 13363571
Alignment:
Q  214 ggtcccttaactaaaaaa--cgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||  ||| |||| |||||| ||||||| ||||   |||||||||||||||||||||||||| |||||    
T  13363653 ggtcccttaactaaaaaaaacgtttcaatttggtcccttatgttttctgtggttacctcttttggtcctctccgttagttttt 13363571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 15116918 - 15116864
Alignment:
Q  226 aaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcct 280  Q
    ||||||||||||||||| |||||||| || |||||| ||||||||||||||||||    
T  15116918 aaaaaacgtctcaaattagtctcttacgttttcttccgttacctcttttggtcct 15116864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 39325906 - 39325838
Alignment:
Q  215 gtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctc 283  Q
    ||||| |||||||||||||| | ||||||||| ||||||| |||||| |||||||||||| ||| ||||    
T  39325906 gtcccctaactaaaaaacgttttaaattggtcccttatgttttcttccgttacctcttttagtcatctc 39325838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 7770100 - 7770174
Alignment:
Q  274 tggtcctctccgttaattttttaatatct-aatattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||||||||| ||||||||| ||| ||| |||| || |||||||||||||| ||||| ||||| ||||||    
T  7770100 tggtcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgta 7770174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 7777777 - 7777851
Alignment:
Q  274 tggtcctctccgttaattttttaatatct-aatattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||||||||| ||||||||| ||| ||| |||| || |||||||||||||| ||||| ||||| ||||||    
T  7777777 tggtcctctccgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgtatgtccattgta 7777851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 13360397 - 13360463
Alignment:
Q  215 gtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctc 281  Q
    ||||| ||| |||||||||||||||||||||| ||||||| |||| | |||| || |||||||||||    
T  13360397 gtcccctaattaaaaaacgtctcaaattggtcccttatgtattctaccgttatctattttggtcctc 13360463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 37274987 - 37275057
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatattt-tgatatgattttaaccattggattggatgtc 340  Q
    |||||||||||||||||| ||||||||| | ||| |||| ||||||||||| ||||||| ||||| |||||    
T  37274987 ttttggtcctctccgttagttttttaatgtataacatttctgatatgatttcaaccattcgattgcatgtc 37275057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 10052166 - 10052227
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||||||||||| |||||||| ||| | |||||||||||||||| ||||| ||| |||||    
T  10052166 gtctcaaattggtcccttatgtcatctgccgttacctcttttggtcatctcctttagttttt 10052227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 38664426 - 38664495
Alignment:
Q  228 aaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaa 297  Q
    |||||||||||||||| || |||||||||| | | ||||||||||||| || | ||||||| ||||||||    
T  38664426 aaaacgtctcaaattgttcccttatgtcttttaccgttacctcttttgttcatatccgttagttttttaa 38664495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 7795869 - 7795944
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaa--tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||||||||| ||||||||| |||||  | |||| || |||||||||||||| ||||| ||||| ||||||    
T  7795869 tggtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattgtatgtccattgta 7795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 44607365 - 44607293
Alignment:
Q  238 aaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    ||||||||||||||||| ||   | |||| || ||||||||||||| |||| ||||||||| |||||||||||    
T  44607365 aaattggtctcttatgtattacgccgttatctattttggtcctctcagttagttttttaatgtctaatatttt 44607293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 38055 - 38161
Alignment:
Q  241 ttggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgt 339  Q
    |||||||| || |||||| || |||  || || ||||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||  |||| ||||    
T  38055 ttggtctcataagtcttcctccgtttactattgtggtcctctccgttagttttt-aatgtctaaattttttgatatgattttaaccatttaattgcatgt 38153  T
Q  340 ctattgta 347  Q
    | ||||||    
T  38154 ccattgta 38161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 370
Target Start/End: Complemental strand, 21671326 - 21671263
Alignment:
Q  307 ttttgatatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacacc 370  Q
    ||||||||| |||| ||||||| ||||| |||||||||||  ||||||||||  ||||||||||    
T  21671326 ttttgatataatttcaaccatttgattgcatgtctattgtgtacaacaatgagccaccaacacc 21671263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 39516507 - 39516436
Alignment:
Q  277 tcctctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    |||||||||||| ||||||||| ||||| | |||| || |||||||||||||| ||||| ||||| ||||||    
T  39516507 tcctctccgttagttttttaatgtctaaattttttcatgtgattttaaccatttgattgcatgtccattgta 39516436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 22621147 - 22621073
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaatatt-ttgatatgattttaaccattggattggatgtctattgta 347  Q
    |||||||||| |||| ||||||||| | ||| ||| ||||||||||||||| |||| ||||| ||||| ||||||    
T  22621147 tggtcctctctgttagttttttaatgtataaaattcttgatatgattttaatcatttgattgcatgtccattgta 22621073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 36757230 - 36757164
Alignment:
Q  277 tcctctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtcta 342  Q
    |||||||| ||| ||||||||| ||||| | ||||||||||||||||||||||  |||| |||||||    
T  36757230 tcctctccattagttttttaatgtctaaattttttgatatgattttaaccatttaattgcatgtcta 36757164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 37474050 - 37473952
Alignment:
Q  273 ttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacacc 370  Q
    |||||||| |||||| |||||||||| ||||||| |||||||||  |||| |||||| ||||| |  || |||||| || ||| |||| ||||||||||    
T  37474050 ttggtcctgtccgtttattttttaatgtctaatatttttgatattgttttgaccattcgattgcagatccattgtataccacattgaaccaccaacacc 37473952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 2419919 - 2419999
Alignment:
Q  216 tcccttaactaaaa-aacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    |||||||||||||| ||||||||||||||||| ||||| | |||| | |||| || |||||||| || | |||| ||||||    
T  2419919 tcccttaactaaaaaaacgtctcaaattggtcccttatatattctgccgttatctattttggtcttcacagttagtttttt 2419999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 7815146 - 7815221
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaa--tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||||||||| ||||||||| |||||  | |||| || |||||||||||||| ||||  ||||| ||||||    
T  7815146 tggtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattctatgtccattgta 7815221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 22295347 - 22295498
Alignment:
Q  16 acaacttttgattacttattcaagaaagaaaa--tcaaacttctgaaatcagtttaacacaacaatcttctaatta-ttatatttaactcaaccatacct 112  Q
    ||||||||||||| ||||||||||||| ||||  |||||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  22295347 acaacttttgattgcttattcaagaaaaaaaaaatcaaacttctcaa-tcagtttaacacaacaatcttctaattagttatatttaactcagccatacct 22295445  T
Q  113 ctatatttgattcaaacaacgtgcttttagtcaaatcaaaagcttaataataa 165  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22295446 ctatatttgattcaaacaacatgcttttagtcaaatcaaaagcttaataataa 22295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 24495122 - 24495044
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  24495122 tcccttaactaaaaaacctctcaaattggtcccttatgtcttcttctgttacctcgtttggtcctctccgttagttttt 24495044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 44113474 - 44113552
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| | ||||||| ||||||||| || ||||| |||||    
T  44113474 tcccttaactaaaaaacgtctcaaattggtcccttatgtattctgccgttacctattttggtccacttcgttagttttt 44113552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 364
Target Start/End: Original strand, 35483617 - 35483768
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttga 312  Q
    ||||||||||||| |||  || |||| |||||||||| ||| |||||||||||||  ||| |||||||||||||| | ||| ||| ||||||| ||||||    
T  35483617 ggtcccttaactataaagtgtttcaatttggtctcttgtgtattcttctgttaccaatttcggtcctctccgttagtatttaaatgtctaatatttttga 35483716  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacacc 364  Q
    | |||||| |||| || ||||| | ||| || ||| |||||| |||| ||||    
T  35483717 tttgatttcaaccgtttgattgcaagtccatcgtatacaacactgaaccacc 35483768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 367
Target Start/End: Original strand, 43111472 - 43111630
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt-ga 312  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |   ||||||| ||||| || ||||||||| ||| ||| |  |||||||||| ||    
T  43111472 ggtcccctaactaaaaaacgtctcaaattgatcacttatgtcttttgtcgttaccttttttg-tcatctccgttagtttattattgactaatatttttga 43111570  T
Q  313 tatgattttaaccattg-----gattggatgtctattgtacacaacaatgaaacaccaac 367  Q
    ||| |||| |||||||      ||||| |||||||||||| ||||||||||| |||||||    
T  43111571 tataatttcaaccattatattcgattgcatgtctattgtatacaacaatgaaccaccaac 43111630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 41126282 - 41126360
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattt 292  Q
    |||||| |||||| |||  ||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||||    
T  41126282 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgttaattt 41126360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 344
Target Start/End: Complemental strand, 26407469 - 26407344
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta-attttttaatatctaat-attttgatatgat 318  Q
    ||||||||||||||||||||||||||||||||||  | |   ||||||| |||| |||||||| ||||  |||||| || |||||| ||||||||| |||    
T  26407469 taactaaaaaacgtctcaaattggtctcttatgttatttgtcgttacctattttagtcctctctgttatttttttttatgtctaataattttgatacgat 26407370  T
Q  319 tttaaccattggattggatgtctatt 344  Q
    || ||||||| ||||| | |||||||    
T  26407369 ttaaaccattcgattgcaggtctatt 26407344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 44114709 - 44114645
Alignment:
Q  234 tctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaat 298  Q
    ||||||| ||||| ||||| |||||| |||| ||||||||||||||||||||||| |||||||||    
T  44114709 tctcaaactggtcccttatatcttctactgtcacctcttttggtcctctccgttagttttttaat 44114645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 2904120 - 2904046
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||| ||||||| || || | ||||||||||| | ||||||||||||||||||||||||||    
T  2904120 ggtcccctaactataaaatgtctcaatttagtttgttatgtcttctgccgttacctcttttggtcctctccgtta 2904046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 30224049 - 30223975
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| | ||||| ||||||||||||||||||||    
T  30224049 ggtcccctaactataaattgtctcaatttggtcccttatgtcttctgccgttacatcttttggtcctctccgtta 30223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 36673909 - 36673835
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||| ||||||| |||||| ||||||||||||   ||||||||||||||||||||| ||||    
T  36673909 ggtcccctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctcagtta 36673835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 28326403 - 28326336
Alignment:
Q  274 tggtcctctccgttaattttttaatatct-aatattttgatatgattttaaccattggattggatgtc 340  Q
    ||||||||||||||| ||||||||| ||| ||| |||| ||||||||||||||||| ||||| |||||    
T  28326403 tggtcctctccgttagttttttaatgtctaaattttttaatatgattttaaccatttgattgcatgtc 28326336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 30222709 - 30222763
Alignment:
Q  234 tctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  30222709 tctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 30222763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 35296822 - 35296752
Alignment:
Q  280 tctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgtaca 349  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||| || ||||| ||||| ||| ||||    
T  35296822 tctccgttaattttttaatgtctaaattttttgatatgattttaaccgtttgattgcatgtccattataca 35296752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 49162280 - 49162360
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||| |||||||||||||||| | ||||||||| ||||||| |||| | ||| ||| ||||||||| || ||||| |||||    
T  49162280 ggtctcttaactaaaaaacgtttaaaattggtcccttatgtattctgccgtttcctattttggtccacttcgttagttttt 49162360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 17288248 - 17288181
Alignment:
Q  281 ctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    |||||||| ||||||||| ||||| | |||||||||||||||||| ||| ||||| ||||| ||||||    
T  17288248 ctccgttagttttttaatgtctaaattttttgatatgattttaactatttgattgcatgtccattgta 17288181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 24494030 - 24494097
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctc 283  Q
    |||| ||||||||||| |||||||||||||| |||||||||| |    |||| |||||||||||||||    
T  24494030 tcccctaactaaaaaatgtctcaaattggtcccttatgtcttttgtcattacttcttttggtcctctc 24494097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 40926535 - 40926496
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  40926535 ttttggtcctctccgttaactttttaatgtctaatatttt 40926496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 41515099 - 41515166
Alignment:
Q  274 tggtcctctccgttaattttttaatatct-aatattttgatatgattttaaccattggattggatgtc 340  Q
    |||| |||||||||||||||||||| ||| ||  |||| ||||||||||||||||| ||||| |||||    
T  41515099 tggttctctccgttaattttttaatgtctaaagttttttatatgattttaaccatttgattgcatgtc 41515166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 18668820 - 18668886
Alignment:
Q  228 aaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||| ||||||| ||||   ||||| | | |||||||| |||||||||||||    
T  18668820 aaaacgtctcaaattggtcccttatgtattctatcgttacttatcttggtcctttccgttaattttt 18668886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 34558354 - 34558300
Alignment:
Q  234 tctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||||||||| | | |||||||||||||||||| |||||||    
T  34558354 tctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 34558300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 38408328 - 38408251
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||||||||| |||||||||||| | |||| || |||||||||||   |||| |||||  || |||||||||||    
T  38408328 gtctcaaattggtcccttatgtcttctgccgttatctattttggtcctcaaagttagtttttggatgtctaatatttt 38408251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 13446672 - 13446604
Alignment:
Q  273 ttggtcctctccgttaattttttaatatctaatattt-tgatatgattttaaccattggattggatgtc 340  Q
    |||||||||||||||| ||||||||| | ||| |||| | ||||||||| ||||||| ||||| |||||    
T  13446672 ttggtcctctccgttagttttttaatgtgtaacatttctcatatgatttcaaccattcgattgcatgtc 13446604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 236 - 373
Target Start/End: Original strand, 11771 - 11909
Alignment:
Q  236 tcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattg 334  Q
    |||| |||||| |||||||||||| | ||||||| |||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||| |||||    
T  11771 tcaatttggtcccttatgtcttctccagttacctattttggtcctctccgttagttttttaatgtctaatatttttgatgtgattttaaccattcgattg 11870  T
Q  335 gatgtctattgtacacaacaatgaaacaccaacaccaaa 373  Q
     |||| ||||||| ||||||||||| |||||||||||||    
T  11871 catgtttattgtatacaacaatgaaccaccaacaccaaa 11909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 214 - 372
Target Start/End: Original strand, 18773697 - 18773856
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt-ga 312  Q
    |||||| ||| || |||| ||||||| |||||| |||||||| |||  |||||||| ||||||||||||| |||| ||||||||| ||| || |||| ||    
T  18773697 ggtcccctaattataaaatgtctcaatttggtcccttatgtcctctcgtgttaccttttttggtcctctctgttagttttttaatgtctgatgtttttga 18773796  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacaccaa 372  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||    
T  18773797 tatgattttaaccattcgattgcatgtctattgtatacaacaatgaaccaccaacaccaa 18773856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 19368572 - 19368517
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| |||||||||||||||||||   |||||||||||| |||||||||||||    
T  19368572 gtctcaatttggtctcttatgtcttctgtcgttacctcttttagtcctctccgtta 19368517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 8447264 - 8447338
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||| | | |||||||||||||||||| |||||||    
T  8447264 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8447338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 8456068 - 8456142
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||| | | |||||||||||||||||| |||||||    
T  8456068 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 13279400 - 13279533
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatattttgat 313  Q
    |||||||||||||| ||  |||||||| ||||| ||||||| |||||   | | || ||| |||| |||| |||| ||||||||| |||||| |||| ||    
T  13279400 ggtcccttaactaagaattgtctcaaactggtcccttatgtattctttcatgatctatttcggtcatctctgttagttttttaatgtctaatttttttat 13279499  T
Q  314 atgattttaaccattggattggatgtctattgta 347  Q
    ||||||| |||| || ||||| | ||| ||||||    
T  13279500 atgatttcaaccgtttgattgtaggtccattgta 13279533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 343
Target Start/End: Original strand, 27438887 - 27438963
Alignment:
Q  268 ctcttttggtcctctccgttaattttttaatatctaatatt-ttgatatgattttaaccattggattggatgtctat 343  Q
    ||||||||||| |||||||||||||||||| || || |||| ||||||| |||||||||| | ||||| | ||||||    
T  27438887 ctcttttggtcatctccgttaattttttaaaatatattattcttgatataattttaaccacttgattgcaggtctat 27438963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 33807789 - 33807828
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  33807789 ttttggtcctctccgttaattttttaatgtctgatatttt 33807828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 2138710 - 2138636
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| || ||| ||||||||||||   ||||||||||||||||||||| ||||    
T  2138710 ggtcccctaactataaagtgtctcaatttagtcccttatgtcttctgtcgttacctcttttggtcctctctgtta 2138636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 13173080 - 13173153
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||||||||||| || || ||||||||||||||||| | |||||||    
T  13173080 ggtcccctaactataaagtgtctcaatttggtctcttatgt-tttttttgttacctcttttggtcgtatccgtta 13173153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 51217661 - 51217806
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttga 312  Q
    |||||| ||| ||||||| | |||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||  |||||| ||||||    
T  51217661 ggtcccctaattaaaaaatgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctccgttagttttttaatgactaatatttttga 51217760  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatga 358  Q
    ||| |||| ||||||| ||||| |||||||||||  ||||||||||    
T  51217761 tataatttcaaccattagattgcatgtctattgtgtacaacaatga 51217806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 218 - 369
Target Start/End: Complemental strand, 34654409 - 34654257
Alignment:
Q  218 ccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatg 316  Q
    ||||||||| ||||||| |||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |||  |||||| |||| |||||    
T  34654409 ccttaactataaaacgtttcaatttggtctcttatgtcttctaccgttacctctattggtcctctccgttaatttttaaatgactaatatttttaatatg 34654310  T
Q  317 attttaaccattggattggatgtctattgtacacaacaatgaaacaccaacac 369  Q
    |||| ||||||| ||||| | ||| |||||| ||||||||||| || ||||||    
T  34654309 atttcaaccattcgattgcaggtccattgtatacaacaatgaaccaacaacac 34654257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 51219039 - 51218959
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| |||| |||  |||||||||||||||| |||||    
T  51219039 ggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttaactcaattggtcctctccgttagttttt 51218959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 27689325 - 27689406
Alignment:
Q  214 ggtcccttaactaaaaaa-cgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||||||||||||||| ||| |||| |||||||||||||| ||||   |||||||||||||||||||||||||| |||||    
T  27689325 ggtcccttaactaaaaaaacgtttcaatttggtctcttatgttttctgtcgttacctcttttggtcctctccgttagttttt 27689406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 40533613 - 40533540
Alignment:
Q  275 ggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||| ||||||    
T  40533613 ggtcccctccgttaattttttaatgtctaaaacttttgatatgattttaaccattggattgcatgtccattgta 40533540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 25889546 - 25889491
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  25889546 gtctcaatttggtcacttatgtcttcttccgttacctcttttggtcctctccgtta 25889491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 35683098 - 35683172
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||    
T  35683098 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 35683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 9415667 - 9415747
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||||| ||||||||| ||||||| || | | ||||||| ||||||||| || ||||| |||||    
T  9415667 ggtcccttaactaaaaaacgtcttaaattggtcccttatgtattatgccgttacctattttggtccacttcgttagttttt 9415747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 30551662 - 30551582
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||| | |||| |||||| ||||||| ||||   |||||||||||||||| ||||||||| |||||    
T  30551662 ggtcccttaactaaaaaacatttcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgttagttttt 30551582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 37624643 - 37624563
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||| |||| ||||||  |||||| ||||   ||||| |||||||||||||||||||| |||||    
T  37624643 ggtcccttaactaaaaaacgtttcaatttggtccgttatgttttctgtcgttacatcttttggtcctctccgttagttttt 37624563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 2238051 - 2237977
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  2238051 ggtcccataactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 2237977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 48935183 - 48935109
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| | |||||||||||||||| |||||||||    
T  48935183 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 48935109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 34531713 - 34531778
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgt 286  Q
    |||||| |||| ||||||| |||||||||||||||||||   |||| |||||||||||||||||||    
T  34531713 taactataaaatgtctcaatttggtctcttatgtcttctgtcgttatctcttttggtcctctccgt 34531778  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 22766893 - 22766813
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||| |||| ||| || ||||||| ||||   ||| |||||||||||||| ||||||| |||||    
T  22766893 ggtcccttaactaaaaaacgtttcaatttgatcccttatgttttctgtcgttgcctcttttggtcctttccgttagttttt 22766813  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 23082199 - 23082119
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||| |||| |||||| ||||| | ||||   ||| |||||||||||||| ||||||| |||||    
T  23082199 ggtcccttaactaaaaaacgtttcaatttggtcccttatattttctgtcgttgcctcttttggtcctttccgttagttttt 23082119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 35684257 - 35684202
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  35684257 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 35684202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 2236856 - 2236930
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| ||||||||||||   ||||||||||||| ||||||||||||    
T  2236856 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttgatcctctccgtta 2236930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 40110665 - 40110591
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaatatt-ttgatatgattttaaccattggattggatgtctattgta 347  Q
    |||||||||| |||| ||||||||| | ||| ||| |||||||||||||||||||| ||||| ||||| ||||||    
T  40110665 tggtcctctctgttagttttttaatgtataaaattattgatatgattttaaccatttgattgcatgtccattgta 40110591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 9417142 - 9417074
Alignment:
Q  242 tggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    ||||| |||||||||||| | || ||||||||  ||||||||||||| ||||||||| | |||||||||    
T  9417142 tggtcccttatgtcttctaccgtcacctctttcagtcctctccgttagttttttaatgtataatatttt 9417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 12667286 - 12667211
Alignment:
Q  273 ttggtcctctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||| |||||||| ||||||||| || || | ||||||| ||||||||| |||| ||||| ||||||||||||    
T  12667286 ttggtcccctccgttagttttttaatgtcgaaattttttgatttgattttaatcatttgattgcatgtctattgta 12667211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 26287778 - 26287719
Alignment:
Q  281 ctccgttaattttttaatatctaatattttgatatgattttaaccattggattggatgtc 340  Q
    |||||||||||||||||| |||||  |||| || |||||||||||||| ||||| |||||    
T  26287778 ctccgttaattttttaatgtctaaattttttatttgattttaaccatttgattgtatgtc 26287719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 27690695 - 27690621
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    ||||||||||||||||||||||||| |||||||| || | | ||||  | ||||||||||| | |||| ||||||    
T  27690695 taactaaaaaacgtctcaaattggtttcttatgtattttaccgttatgtattttggtcctcacagttagtttttt 27690621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 29001181 - 29001115
Alignment:
Q  228 aaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||| ||||||| ||||   ||||| | | |||||||| |||||||||||||    
T  29001181 aaaacgtctcaaattggtcccttatgtattctgtcgttacttatcttggtcctttccgttaattttt 29001115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 50679894 - 50679748
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatct-aatattttga 312  Q
    ||||||||||||| |||  ||||||| |||||| | || |||||| || |||  ||  | ||||||||||||||| ||||||||| ||| ||| ||||||    
T  50679894 ggtcccttaactataaagtgtctcaatttggtcccataagtcttcctccgtttactaatatggtcctctccgttagttttttaatgtctaaattttttga 50679795  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaa 359  Q
    |||| ||| |||| || ||||| | ||  |||||| |||||| ||||    
T  50679794 tatgttttcaaccgtttgattgtaggttcattgtatacaacactgaa 50679748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 1061524 - 1061451
Alignment:
Q  215 gtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||| |||||| |||  |||| || |||||| |||||||||| | | |||||||||||||||||| |||||||    
T  1061524 gtcccctaactataaagtgtcttaatttggtcacttatgtcttttgccgttacctcttttggtcctatccgtta 1061451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 46127832 - 46127897
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcc 279  Q
    |||||||||| ||| |||||| |||| ||| || |||||||||||| | ||||| |||||||||||    
T  46127832 ggtcccttaagtaacaaacgtttcaatttgatcacttatgtcttctacggttacttcttttggtcc 46127897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 48528909 - 48528832
Alignment:
Q  272 tttggtcctctccgttaattttttaatatctaata-ttttgatatgatttt-aaccattggattggatgtctattgta 347  Q
    ||||||||  ||||||| ||||||||||||||| | ||||||| ||||||| ||||||| ||||| ||||| ||||||    
T  48528909 tttggtcccatccgttagttttttaatatctaaaacttttgatttgattttaaaccattagattgcatgtccattgta 48528832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 22169290 - 22169210
Alignment:
Q  216 tcccttaactaaaaaa-cgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    |||||||||||||||| ||||||||| ||||| ||||||| |||| | |||| || |||||||| || | |||| ||||||    
T  22169290 tcccttaactaaaaaaacgtctcaaactggtcccttatgtattctgccgttatctattttggtcttcgcagttagtttttt 22169210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 44977264 - 44977344
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||| |||  |||| ||| ||||| |||||||||||| | |||||||| ||||||| |||| |||| |||||    
T  44977264 ggtcccctaactataaagtgtcttaaactggtcccttatgtcttctgccgttacctcatttggtcatctctgttagttttt 44977344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 47560239 - 47560287
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatattttgatatgatt 319  Q
    |||||||| |||||||||||||||| || | ||||||||| ||||||||    
T  47560239 ttttggtcatctccgttaattttttgatgtataatattttaatatgatt 47560287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 51446846 - 51446802
Alignment:
Q  281 ctccgttaattttttaatatct-aatattttgatatgattttaac 324  Q
    |||||||| ||||||||||||| ||| ||||||||||||||||||    
T  51446846 ctccgttagttttttaatatctaaattttttgatatgattttaac 51446802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 373
Target Start/End: Original strand, 17345354 - 17345513
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatattttga- 312  Q
    |||||| ||||||||||   |||||| |||||  ||||  |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |     
T  17345354 ggtcccctaactaaaaagtatctcaatttggttccttaaatcttcttctgttacct-ttttggtcctctccgttagttttttaatgtctaatatttttaa 17345452  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacaccaaa 373  Q
    |||||||| ||||||| ||||| |||||||||||| |||||||| || |||||||||||||    
T  17345453 tatgatttgaaccattcgattgcatgtctattgtatacaacaataaaccaccaacaccaaa 17345513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 7483598 - 7483518
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||    
T  7483598 ggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcatctccgttagttttt 7483518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 359
Target Start/End: Complemental strand, 7921697 - 7921570
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattgga 331  Q
    |||||||||||||| ||||||| || |   ||||||| ||||| |||||||||||| ||||||||| ||||||| |||||||||||||| ||||||| ||    
T  7921697 gtctcaaattggtcccttatgtattgtgtcgttacctattttgatcctctccgttagttttttaatgtctaatatttttgatatgatttcaaccattcga 7921598  T
Q  332 ttggatgtctattgtacacaacaatgaa 359  Q
    |||   ||||| |||| |||||| ||||    
T  7921597 ttgtcggtctactgtatacaacagtgaa 7921570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 17350173 - 17350095
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||| |||||| |||  ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |||||    
T  17350173 tcccctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgttagttttt 17350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 370
Target Start/End: Original strand, 26797369 - 26797519
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgatt 319  Q
    |||||||||||||||||||||||||  ||||||| || | | ||||||| | |||| ||||||||||| |||| ||||   ||||| ||||||||| |||    
T  26797369 taactaaaaaacgtctcaaattggttccttatgtattatgccgttacctatcttggccctctccgttagttttctaatgattaatatttttgatataatt 26797468  T
Q  320 ttaaccattggattggatgtctattgtacacaacaatgaaacaccaacacc 370  Q
    | ||||||| ||||| | ||| |||||| ||||||||| | || |||||||    
T  26797469 tcaaccatttgattgcaggtccattgtatacaacaatggaccatcaacacc 26797519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 7483161 - 7483234
Alignment:
Q  223 actaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttta 296  Q
    ||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||||  |||| |||||||    
T  7483161 actaaaaaacgtctcaaattggtctcttatgtcttttgtcgttacctcttttggtcctctatgttagtttttta 7483234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 31638173 - 31638241
Alignment:
Q  226 aaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||| || |||||    
T  31638173 aaaaaacgtctcaaattggttccttatgtcttcttatgttacctcttttgatcctctccgctagttttt 31638241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 31638712 - 31638603
Alignment:
Q  225 taaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaa 323  Q
    |||| |||||||||||||| || |||||||||| |||||||| || ||||||| || ||||||| ||| |||| || |||| |||| |||||| ||||||    
T  31638712 taaagaacgtctcaaattgatc-cttatgtctttttctgttatctattttggttctttccgttagtttcttaagatataatttttttgatatgcttttaa 31638614  T
Q  324 ccattggattg 334  Q
    |||||||||||    
T  31638613 ccattggattg 31638603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 32973182 - 32973256
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| | |||||||||||| |||||||||||||    
T  32973182 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctctttttgtcctctccgtta 32973256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 32974296 - 32974222
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| | |||||||||||||||| |||||||||    
T  32974296 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 32974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 48035397 - 48035323
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||| | | ||||||||||||||||||||||||||    
T  48035397 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctctccgtta 48035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 53047940 - 53048014
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  53047940 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 53049110 - 53049036
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  53049110 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53049036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 39133060 - 39133140
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||| |||  ||||||| |||||| ||||||||||||   ||||||||||||||||||||| |||| |||||    
T  39133060 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgttagttttt 39133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 53809500 - 53809432
Alignment:
Q  280 tctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||| ||||||||| ||||| | ||||||||| |||||||||||| ||||| ||||||||||||    
T  53809500 tctccgttagttttttaatgtctaaattttttgatataattttaaccatttgattgcatgtctattgta 53809432  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 54750448 - 54750389
Alignment:
Q  281 ctccgttaattttttaatatctaatattttgatatgattttaaccattggattggatgtc 340  Q
    |||||||||||||||||| |||||  ||||||| |||||||||||||| ||||| |||||    
T  54750448 ctccgttaattttttaatgtctaaatttttgatttgattttaaccatttgattgtatgtc 54750389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 52293596 - 52293522
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| ||||||  |||||||||||   ||||||||||||||||||||||||||    
T  52293596 ggtcccctaactataaagtgtctcaatttggtcctttatgtcttctatcgttacctcttttggtcctctccgtta 52293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 34903067 - 34902987
Alignment:
Q  214 ggtcccttaactaaaaaa-cgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||||||||||||||| ||| |||| |||||||||||||| ||||   |||| ||||||||||| ||||||||| |||||    
T  34903067 ggtcccttaactaaaaaaacgtttcaatttggtctcttatgttttctgtcgtta-ctcttttggtcatctccgttagttttt 34902987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 32980468 - 32980404
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaaccattggattg 334  Q
    |||||||| ||||||||| ||||||||| ||||| ||||| |||||||||| ||||||| |||||    
T  32980468 ttttggtcatctccgttagttttttaatttctaacatttttgatatgatttcaaccattcgattg 32980404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 48253042 - 48253110
Alignment:
Q  280 tctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||| ||||||||| ||||| | ||||||| |||||||||||||| ||||| ||||| ||||||    
T  48253042 tctccgttagttttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgta 48253110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 7583532 - 7583587
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| ||||||||||||||||| | | |||||||||||||||| | |||||||    
T  7583532 gtctcaatttggtctcttatgtcttttaccgttacctcttttggtcatatccgtta 7583587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 11481963 - 11482018
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| |||||| |||||||||| | | |||||||||||||||||| |||||||    
T  11481963 gtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 11482018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 34901696 - 34901759
Alignment:
Q  215 gtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtc 278  Q
    ||||||||| |||||||||||| ||||||||| ||||||| |||| | |||| || ||||||||    
T  34901696 gtcccttaattaaaaaacgtcttaaattggtcccttatgtattctaccgttatctattttggtc 34901759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 39287532 - 39287587
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| |||||| ||||||| ||||   ||||||||||||||||||||||||||    
T  39287532 gtctcaatttggtcccttatgttttctgtcgttacctcttttggtcctctccgtta 39287587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 1301075 - 1301141
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcct 280  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||| | | ||||||||||||||||||    
T  1301075 ggtcccataactataaagtgtctcaatttggtcccttatgtcttttaccgttacctcttttggtcct 1301141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 5416241 - 5416315
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||| ||||||| |||||| |||||||||| |   |||||||||||||||||  |||||||    
T  5416241 ggtcccctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcccatccgtta 5416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 5417121 - 5417047
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  |||||| ||||||| |||||||||| |  ||||||||||||||||| | |||||||    
T  5417121 ggtcccctaactataaagtgtctcagattggtcccttatgtcttttgttgttacctcttttggtcttatccgtta 5417047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 14744175 - 14744221
Alignment:
Q  280 tctccgttaattttttaatatct-aatattttgatatgattttaacc 325  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||    
T  14744175 tctccgttaattttttaatgtctaaattttttgatatgattttaacc 14744221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 25585891 - 25585785
Alignment:
Q  229 aaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatattt-tgatatgattttaaccat 327  Q
    ||||||||||| |||||||| ||  ||||||   |||  || |||| ||| ||||||||| ||||||||| ||||| |||| ||||||||||| ||||||    
T  25585891 aaacgtctcaatttggtctcataaatcttctgtcgtttactattttagtcatctccgttagttttttaatgtctaacatttctgatatgatttgaaccat 25585792  T
Q  328 tggattg 334  Q
    | |||||    
T  25585791 tcgattg 25585785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 27234770 - 27234688
Alignment:
Q  214 ggtcccttaactaaaaaac-gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    ||||| ||||||||||||  |||||||| ||||| || |||| |||| | ||||||| ||||||||||| |||||| ||||||    
T  27234770 ggtcctttaactaaaaaaatgtctcaaactggtccctcatgtattctgccgttacctattttggtcctcgccgttagtttttt 27234688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 46496839 - 46496737
Alignment:
Q  272 tttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacacc 370  Q
    |||||||| ||||||||| ||||||||  ||||||| || |||||||||| ||||||| ||||| | | ||||||||   |||| | || ||||||||||    
T  46496839 tttggtccactccgttaactttttaatgcctaatatcttagatatgatttcaaccattagattgcaggactattgtatgtaacagtaaaccaccaacacc 46496740  T
Q  371 aaa 373  Q
    |||    
T  46496739 aaa 46496737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 19579367 - 19579306
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttg 275  Q
    ||||||||||||| |||  ||||||| |||||| ||||||||||||   |||||||||||||    
T  19579367 ggtcccttaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttg 19579306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 19622973 - 19622896
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||| ||||| ||||||||||||   |||| || |||||||| || | ||||||||||| || |||||||||||    
T  19622973 gtctcaaactggtcccttatgtcttctgtcgttatctattttggtcatcgcagttaattttttgatgtctaatatttt 19622896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 40501858 - 40501931
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| ||||  |||||| |||||| |||||||||| | | |||||||||||||||| | |||||||| ||||    
T  40501858 taactataaaatatctcaatttggtcccttatgtcttttgccgttacctcttttggtcttatccgttaaatttt 40501931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 8372632 - 8372568
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaaccattggattg 334  Q
    ||||||||  |||||||| ||||||||| | ||||||||| |||||||||| ||||||| |||||    
T  8372632 ttttggtcacctccgttagttttttaatgtttaatatttttgatatgatttcaaccattcgattg 8372568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 25583157 - 25583237
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| ||||||  ||||||||||| |||||| | || ||||||| | |||  || ||||||||||||| ||||||||||    
T  25583157 ggtcccctaactattaaacgtctcaatttggtcccataagtcttctgccgtttactattttggtcctctctgttaattttt 25583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 47766962 - 47766890
Alignment:
Q  276 gtcctctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||| ||||| ||||||||| ||||| | |||| || |||||||||||||| ||||| ||||| ||||||    
T  47766962 gtcctctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttgattgcatgtccattgta 47766890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 24866 - 24728
Alignment:
Q  236 tcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattg 334  Q
    |||| |||||| ||||||||||| || ||||||| |||||||| ||||||||| ||||||||| ||||||| |||| || ||||||||||||||  ||||    
T  24866 tcaatttggtcccttatgtcttcctccgttacctattttggtcatctccgttagttttttaatgtctaatattttttatgtgattttaaccattcaattg 24767  T
Q  335 gatgtctattgtacacaacaatgaaacaccaacaccaaa 373  Q
     |||||||||||| ||||||||||| |||||||||||||    
T  24766 catgtctattgtatacaacaatgaaccaccaacaccaaa 24728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 14716236 - 14716111
Alignment:
Q  246 ctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatat-tttgatatgattttaaccattggattggatgtctatt 344  Q
    |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||| |  |||| ||||| |||||||||    
T  14716236 ctcttaagtcttcttctgttacctcttttggtcctctccattagttttttaatatctaatatctttgatttgatttcagtcattcgattgcatgtctatt 14716137  T
Q  345 gtacacaacaatgaaacaccaacacc 370  Q
     || ||||||||||| ||||||||||    
T  14716136 atatacaacaatgaaccaccaacacc 14716111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 221 - 370
Target Start/End: Complemental strand, 4513819 - 4513669
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgatt 319  Q
    |||||||||||||||| |||||||||| |||||||||||   ||||||||||||| | |||||||||| ||||||| ||  ||||| ||||||||| |||    
T  4513819 taactaaaaaacgtcttaaattggtcttttatgtcttctgtcgttacctcttttgattctctccgttagttttttattaaataatatttttgatataatt 4513720  T
Q  320 ttaaccattggattggatgtctattgtacacaacaatgaaacaccaacacc 370  Q
    | ||||||| ||||| |||||||||||  ||||||||||  ||||||||||    
T  4513719 tcaaccatttgattgcatgtctattgtgtacaacaatgagccaccaacacc 4513669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 26205058 - 26205136
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||    
T  26205058 tcccttaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcgtttggtcctctccgttagttttt 26205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 218 - 370
Target Start/End: Complemental strand, 4830744 - 4830591
Alignment:
Q  218 ccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatg 316  Q
    ||||||||| ||||||| | || |||||||||||| ||| || | |||| ||||||| ||||||||||||| ||||| ||| ||||||| ||||||||||    
T  4830744 ccttaactataaaacgttttaatttggtctcttatatctcctaccgttatctcttttagtcctctccgttagtttttgaatgtctaatatttttgatatg 4830645  T
Q  317 attttaaccattggattggatgtctattgtacacaacaatgaaacaccaacacc 370  Q
    |||| ||||||| ||||| | ||| |||||| |||||| |||| || |||||||    
T  4830644 atttcaaccattcgattgtaggtccattgtatacaacattgaaccaacaacacc 4830591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 4512149 - 4512229
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||| |||||    
T  4512149 ggtcccataactaaaaaacgtctcaaattggtcccttgtgtcttcttccgttacctcttttggtcctctccattagttttt 4512229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 26206070 - 26205963
Alignment:
Q  264 ttacctcttttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaaccattggattggatgtctattgtacacaacaatgaaaca 362  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||  |||| |||| ||||||| ||||| |||||||||||| |||||||||||  |    
T  26206070 ttacctcttttggtcctctccgttagttttttaatgactaatattttatatataatttcaaccattcgattgcatgtctattgtatacaacaatgaacaa 26205971  T
Q  363 ccaacacc 370  Q
    ||||||||    
T  26205970 ccaacacc 26205963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 14714536 - 14714615
Alignment:
Q  215 gtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||| |||||||| ||||||||||  |||||||||||||| |||||| ||||||||||||||||||| |||||    
T  14714536 gtcccttaacttaaaaacgtttcaaattggttgcttatgtcttcttccgttaccacttttggtcctctccgttagttttt 14714615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 2305585 - 2305657
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||| |||||| |||  ||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||    
T  2305585 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 2305657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 41296527 - 41296447
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||| |||| |||||| ||||||| || |   |||| ||||||||||||||||||||| |||||    
T  41296527 ggtcccttaactaaaaaacgtttcaatttggtcccttatgttttttgtcgttatctcttttggtcctctccgttagttttt 41296447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 37982741 - 37982788
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacc 268  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  37982741 taactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacc 37982788  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 4630157 - 4630083
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| ||||||||||||||||| |  ||||||||||||||||||| |||||||    
T  4630157 ggtcccctaactataaagtgtctcaatttggtctcttatgtcttttgttgttacctcttttggtcctatccgtta 4630083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 326
Target Start/End: Complemental strand, 8538698 - 8538584
Alignment:
Q  214 ggtcccttaactaaaaaa-cgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttg 311  Q
    |||| ||||||||||||| ||||||||||||||| |||||   |||    ||||||| |||||||| |||||||||||||||||||  |||||| |||||    
T  8538698 ggtctcttaactaaaaaaacgtctcaaattggtcccttatacattccgtcgttacctattttggtcatctccgttaattttttaatgactaatatttttg 8538599  T
Q  312 atatgattttaacca 326  Q
    |||| |||| |||||    
T  8538598 atataatttcaacca 8538584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 41312563 - 41312617
Alignment:
Q  234 tctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||    
T  41312563 tctcaatttggtctcttatgtcttatgccgttacctcttttggtcctctccgtta 41312617  T

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Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 15850155 - 15850251
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||| |||||||| |||  ||||||| |||||| ||| ||| |||||||||||||| ||| ||||||||| |||| | ||| ||| |||||||||||    
T  15850155 ggtctcttaactataaagtgtctcaatttggtcccttgtgtattcttctgttacctatttcggtcctctctgttagtatttaaatgtctaatatttt 15850251  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 2306715 - 2306660
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| ||||||  ||||||||||| | ||||||||||||||||||||||||||    
T  2306715 gtctcaatttggtccattatgtcttctgccgttacctcttttggtcctctccgtta 2306660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 8537061 - 8537135
Alignment:
Q  220 ttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||||||||| |||||||||||||| ||||||| ||||   |||| || |||||||| ||||||||| |||||    
T  8537061 ttaactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgttagttttt 8537135  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 19397644 - 19397710
Alignment:
Q  282 tccgttaattttttaatatctaata-ttttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||| ||||||||| ||||| | ||||||||| |||||||||||||||||| ||||| ||||||    
T  19397644 tccgttatttttttaatgtctaaaacttttgatataattttaaccattggattgcatgtccattgta 19397710  T

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Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 33836812 - 33836886
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| ||||||  |||||||||||   ||||||||||||||||||||||||||    
T  33836812 ggtcccctaactataaagtgtctcaatttggtcatttatgtcttctatcgttacctcttttggtcctctccgtta 33836886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 36422795 - 36422698
Alignment:
Q  214 ggtcccttaactaaaaaa-cgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| || |   |||| || ||||||| ||||| | || ||||||||| |||||||||||    
T  36422795 ggtcccttaactaaaaaaacgtttcaaattggtcccttatgtattatgtcgttatctattttggtactctcagatagttttttaatgtctaatatttt 36422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 12958403 - 12958431
Alignment:
Q  157 taataataaggcttaatatatcatttggt 185  Q
    |||||||||||||||||||||||||||||    
T  12958403 taataataaggcttaatatatcatttggt 12958431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 41295149 - 41295229
Alignment:
Q  215 gtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    ||||| ||| |||||||||||||||||||||| ||||| | |||| | |||| || |||||||| || | |||| ||||||    
T  41295149 gtcccctaattaaaaaacgtctcaaattggtcccttatatattctaccgttatctattttggtcatcgcagttagtttttt 41295229  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 214 - 369
Target Start/End: Original strand, 2292193 - 2292349
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttga 312  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||| |||| |||||||||  |||||| ||||||    
T  2292193 ggtcccctaactaaaaaacgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctctgttagttttttaatgactaatatttttga 2292292  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacac 369  Q
    ||| |||| ||||||  ||||| |||||||||    ||||||||||  |||||||||    
T  2292293 tataatttcaaccatcagattgcatgtctattacgtacaacaatgagccaccaacac 2292349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 36604914 - 36604822
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatat 307  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||    
T  36604914 ggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcctctccgtt-agtttttaatatcaaatat 36604822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 373
Target Start/End: Complemental strand, 43895633 - 43895530
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaacac 369  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||| | ||||||||||||  |||| ||| |||||||| ||||||||||| || ||||||    
T  43895633 ttttggtcatctccgttaattttttaatgtctaatatttttgatgtaattttaaccattcaattgcatgactattgtatacaacaatgaaccatcaacac 43895534  T
Q  370 caaa 373  Q
    ||||    
T  43895533 caaa 43895530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 29686299 - 29686380
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttt 295  Q
    ||||||||||||| |||  |||||||||||||| |||||||||| |   |||||||||||||||||||||||||||||||||    
T  29686299 ggtcccttaactataaattgtctcaaattggtcccttatgtcttatgtcgttacctcttttggtcctctccgttaatttttt 29686380  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 2293598 - 2293518
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||| || | |||| |||||||||||||||| |||||    
T  2293598 ggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgtaatctctattggtcctctccgttagttttt 2293518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 214 - 368
Target Start/End: Original strand, 43418076 - 43418231
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttga 312  Q
    ||||||||||||| |||  || |||| |||| | ||||||| ||||||||||| || ||| |||| ||||||||| | ||||||| ||||||| ||||||    
T  43418076 ggtcccttaactataaagtgtttcaatttggccccttatgtattcttctgttatctatttcggtcatctccgttagtattttaatgtctaatatttttga 43418175  T
Q  313 tatgattttaaccattggattggatgtctattgtacacaacaatgaaacaccaaca 368  Q
    | |||||| ||||||| ||||| | ||| || ||| |||||| |||| ||||||||    
T  43418176 tttgatttcaaccatttgattgcaagtccatcgtatacaacactgaaccaccaaca 43418231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 347
Target Start/End: Complemental strand, 46796099 - 46795965
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaa-tattttga 312  Q
    |||||| |||||| |||  ||||||| |||||| | || |||||| || |||  || || ||||||||||||||| ||||||||| ||||| | ||||||    
T  46796099 ggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtttactattgtggtcctctccgttagttttttaatgtctaaattttttga 46796000  T
Q  313 tatgattttaaccattggattggatgtctattgta 347  Q
    |||||||||||||||| ||||| ||||| ||||||    
T  46795999 tatgattttaaccatttgattgcatgtccattgta 46795965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 36604483 - 36604565
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaatttttta 296  Q
    |||||| |||||||||||||||| ||||||||| |||||||||| |   ||||||||||||| || ||||||||| |||||||    
T  36604483 ggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgttagtttttta 36604565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 526792 - 526718
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||| |||  |||||||||||||||||||||||||||    
T  526792 ggtcccctaactataaagtgtctcaacttggtcccttatgtcatctgatgttacctcttttggtcctctccgtta 526718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 18358446 - 18358373
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtt 287  Q
    |||||| |||||||||||||||| ||||||||| |||||||||| |   ||||||||||||| || ||||||||    
T  18358446 ggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgtt 18358373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 44160469 - 44160400
Alignment:
Q  229 aaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaat 298  Q
    |||||||||||||||||| ||||||| |||||||||||| | || |||||||||| |||| | |||||||    
T  44160469 aaacgtctcaaattggtcccttatgtattcttctgttacttattgtggtcctctctgttagtattttaat 44160400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 56001281 - 56001208
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaatattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||| ||||| ||||||||| |||||| |||| || |||||||||||||| ||||| ||||| ||||||    
T  56001281 tggtcctcttcgttagttttttaatgtctaatttttttatgtgattttaaccatttgattgcatgtccattgta 56001208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 29665581 - 29665513
Alignment:
Q  280 tctccgttaattttttaatatctaa-tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||||||||||||| ||||| | ||||||| |||||||||||||| ||||| ||||| ||||||    
T  29665581 tctccgttaattttttaatgtctaaattttttgatgtgattttaaccatttgattgcatgtccattgta 29665513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 346
Target Start/End: Complemental strand, 38371876 - 38371745
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaat-attttgata 314  Q
    |||| ||||||||||||||||||||||| || |||||||||| |   ||||||| |||| ||  |||| | || |||||| || |||||| |||||||||    
T  38371876 tcccctaactaaaaaacgtctcaaattgatcccttatgtcttttgtcgttacctattttagttatctctgatagttttttgatgtctaataattttgata 38371777  T
Q  315 tgattttaaccattggattggatgtctattgt 346  Q
      |||| ||||||| ||||| | |||||||||    
T  38371776 caatttaaaccattcgattgcaggtctattgt 38371745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 2310855 - 2310781
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||| ||||||| |||||| |||||||||| | | ||||||||||||| |||| |||||||    
T  2310855 ggtcccctaactataaaatgtctcaatttggtcccttatgtcttttgccgttacctcttttgatcctatccgtta 2310781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 310
Target Start/End: Complemental strand, 15787518 - 15787479
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  15787518 ttttggtcctctccattaattttttaatgtctaatatttt 15787479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 47667240 - 47667355
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaa-tattttgatatgattttaaccattgga 331  Q
    ||||||| |||||||| || |||||| || |||  ||  | ||||||||| ||||| ||||||||| ||||| | |||| || |||||||||||||| ||    
T  47667240 gtctcaatttggtctcataagtcttcctccgtttactaatatggtcctctgcgttagttttttaatgtctaaatttttttatgtgattttaaccatttga 47667339  T
Q  332 ttggatgtctattgta 347  Q
    ||| ||||| ||||||    
T  47667340 ttgcatgtccattgta 47667355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 29833415 - 29833489
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| ||| || |||| ||||||| |||||| ||||| |||| |   ||||||||||||||||||||||||||    
T  29833415 ggtcccctaattataaaatgtctcaatttggtcccttatatcttttgtcgttacctcttttggtcctctccgtta 29833489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 30672118 - 30672068
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctc 283  Q
    ||||||| |||||| |||||||||||| | ||||||| |||||||||||||    
T  30672118 gtctcaatttggtcccttatgtcttctgccgttacctgttttggtcctctc 30672068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 52880857 - 52880931
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| ||||||  ||||||||| | | |||||||||||||||||| |||||||    
T  52880857 ggtcccctaactataaagtgtctcaatttggtcctttatgtcttttgccgttacctcttttggtcctatccgtta 52880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 3528295 - 3528367
Alignment:
Q  276 gtcctctccgttaattttttaatatctaatattttg-atatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||| ||| ||||||||| |||||| ||||  || |||||||||||||| ||||| ||||| ||||||    
T  3528295 gtcctctccattagttttttaatgtctaattttttttatgtgattttaaccatttgattgcatgtccattgta 3528367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 52980102 - 52980134
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgtt 265  Q
    ||||||||||||||||||||||||||| |||||    
T  52980102 gtctcaaattggtctcttatgtcttctgctgtt 52980134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 12829613 - 12829709
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||||||| | ||  ||||||||| |||| | |||||||||||||||||||    
T  12829613 ggtcccttaactaagaaacgtctcaaattggtcccttatgtattcttctgttacttattgcggtcctctctgttagtattttaatatctaatatttt 12829709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 12861592 - 12861688
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt 310  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||||||| | ||  ||||||||| |||| | |||||||||||||||||||    
T  12861592 ggtcccttaactaagaaacgtctcaaattggtcccttatgtattcttctgttacttattgcggtcctctctgttagtattttaatatctaatatttt 12861688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 333
Target Start/End: Original strand, 41905218 - 41905338
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttga 312  Q
    |||||| |||||| |||| |||| ||| ||||| |||||||||||| | || |||||||||| |||||||||||| ||||||||| | | ||| |||| |    
T  41905218 ggtcccctaactataaaatgtcttaaactggtcccttatgtcttctaccgtcacctcttttgatcctctccgttagttttttaatgtatcatatttttaa 41905317  T
Q  313 tatgattttaaccattggatt 333  Q
    ||||||| |||||||| ||||    
T  41905318 tatgattataaccatttgatt 41905338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 41906471 - 41906391
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||||||||||||||| | ||||| | |||| | ||||||| ||||||||| || ||||| |||||    
T  41906471 ggtcccttaactaaaaaacgtctcaaattggccccttatatattctgccgttacctattttggtccacttcgttagttttt 41906391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 8188213 - 8188146
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaatattt-tgatatgattttaaccattggattggatgtc 340  Q
    ||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||| ||||| |||||    
T  8188213 tggtcctctccgttagttttttaatgtctaaaatttctgatatgattttaaccatttgattgcatgtc 8188146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 15509238 - 15509312
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| | ||||||| ||||||||||||||||||    
T  15509238 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtcctctccgtta 15509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 20988733 - 20988807
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| || |||||||||||||| | | ||||||||||||||||||||||||||    
T  20988733 ggtcccctaactataaagtgtctcaatttagtctcttatgtcttgtgccgttacctcttttggtcctctccgtta 20988807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 340
Target Start/End: Original strand, 5975818 - 5975926
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaaccattgga 331  Q
    ||||||| |||||||| || |||||| ||||||  || || |||| ||||| |||| ||||||||| |||||  |||| |||||||||||||||||| ||    
T  5975818 gtctcaatttggtctcataagtcttcctctgtttactattgtggttctctctgttagttttttaatgtctaaagtttttgatatgattttaaccatttga 5975917  T
Q  332 ttggatgtc 340  Q
    ||| |||||    
T  5975918 ttgcatgtc 5975926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 10736950 - 10736874
Alignment:
Q  272 tttggtcctctccgttaattttttaatatctaatatttt-gatatgattttaaccattggattggatgtctattgta 347  Q
    |||||||| ||||||||| |||||||| ||||| ||||| ||| |||||||||||||| ||||| ||||| ||||||    
T  10736950 tttggtcccctccgttaactttttaatgtctaaaatttttgatttgattttaaccatttgattgaatgtccattgta 10736874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 15510334 - 15510262
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||| |||||| |||  ||||||| |||||| |||||||||||| | ||||||||||||||||||||| ||||    
T  15510334 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctctgtta 15510262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 22650701 - 22650627
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||| | | |||||||||||||||||| |||||||    
T  22650701 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 22650627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 1273132 - 1273253
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaatatttt-ga 312  Q
    ||||| ||||||| |||| ||||||| |||||| | ||  |||||| | |||  |  ||||||||| |||||||| ||||||||| | ||||||||| ||    
T  1273132 ggtcctttaactataaaatgtctcaatttggtcccataaatcttctgcagtttacaattttggtcccctccgttagttttttaatgtttaatatttttga 1273231  T
Q  313 tatgattttaaccattggattg 334  Q
    |||||||| ||||||| |||||    
T  1273232 tatgatttcaaccattcgattg 1273253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 5384362 - 5384298
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattg 334  Q
    |||||||||||||||||| ||||||||| | ||||| ||||||||| |||| ||||||| |||||    
T  5384362 ttttggtcctctccgttagttttttaatgtttaatatttttgatataatttcaaccattcgattg 5384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 14210186 - 14210266
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||||||||||||||||||||||| ||||    |||| | ||||||| ||||| ||||||| |||| |||||    
T  14210186 ggtcccataactaaaaaacgtctcaaattggtcccttagacattctgccgttacctattttgatcctctctgttagttttt 14210266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 22818208 - 22818292
Alignment:
Q  219 cttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatcta 303  Q
    ||||||||| |||||||| ||||| ||||| ||||| |||||||||||| | ||  |||||||||  ||| | ||||||||||||    
T  22818208 cttaactaagaaacgtcttaaattagtctcatatgtattcttctgttacttattgcggtcctctcaattagtattttaatatcta 22818292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 2166156 - 2166199
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttct 259  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||    
T  2166156 tcccttaactaaaaaacgtctcaaactggtcccttatgtattct 2166199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 359
Target Start/End: Complemental strand, 14212256 - 14212118
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgatt 319  Q
    ||||||||||| |||||||||| ||| ||||||| || |   ||||||| |||| ||||||| ||||||||| |||||  |||||| |||| || | |||    
T  14212256 taactaaaaaatgtctcaaatt-gtcccttatgtattatatcgttacctattttagtcctcttcgttaatttcttaatggctaatattttttatgtaatt 14212158  T
Q  320 ttaaccattggattggatgtctattgtacacaacaatgaa 359  Q
    | ||||||| ||||| | ||| ||| ||||||||| ||||    
T  14212157 tcaaccattcgattgcaggtccattatacacaacagtgaa 14212118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 20991715 - 20991648
Alignment:
Q  221 taactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||| ||||||| |||||| |||||||||| |   |||||||||||||||||| |||||||    
T  20991715 taactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcctatccgtta 20991648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 4568047 - 4567973
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| |||||| |||||||||||| |  |||||| |||||||| |||||||||    
T  4568047 ggtcccctaactataaagtgtctcaatttggtcccttatgtcttctgcctttacctattttggtcatctccgtta 4567973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 4566996 - 4567068
Alignment:
Q  216 tcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||| |||||| |||  ||||||| |||||| ||||||||||||   |||||||||||||||| |||| ||||    
T  4566996 tcccctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcatctctgtta 4567068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 18693741 - 18693821
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||| |||| |||||||  ||||| | ||  ||||||   ||||||||||||||||||||| |||| |||||    
T  18693741 ggtcccttaactataaaatgtctcaatctggtcccataaatcttctgtcgttacctcttttggtcctctctgttagttttt 18693821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 21387680 - 21387760
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    |||||| |||||| |||| ||||||| |||||| | ||  |||||| | |||||||||||||||||| || |||| |||||    
T  21387680 ggtcccctaactataaaatgtctcaatttggtcccataaatcttctgccgttacctcttttggtcctgtctgttagttttt 21387760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 207860 - 207791
Alignment:
Q  225 taaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttt 294  Q
    ||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||| |||||    
T  207860 taaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgttagttttt 207791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 343
Target Start/End: Complemental strand, 73036 - 72929
Alignment:
Q  237 caaattggtctcttatgtcttcttctgttacctcttttggtcctctccgttaattttttaatatctaata-ttttgatatgattttaaccattggattgg 335  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||| |||||| |  | ||||| |||| |||||||| ||||| || |||||     
T  73036 caaattggtctcttatgtcttctgtcgttacctcttttggtcctctccgttagtttttttaattataatatttttaatatgattataaccgtttgattgc 72937  T
Q  336 atgtctat 343  Q
    | ||||||    
T  72936 aggtctat 72929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 1817 - 1872
Alignment:
Q  233 gtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    ||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||    
T  1817 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 1872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 458506 - 458459
Alignment:
Q  241 ttggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||||    
T  458506 ttggtcccttatgtcttctgctgttatctcttttggtcctctccgtta 458459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 48475 - 48399
Alignment:
Q  268 ctcttttggtcctctccgttaattttttaatatctaatatt-ttgatatgattttaaccattggattggatgtctat 343  Q
    ||||||||||| |||||||||||||||||| || || |||| ||||||| |||||||||| | ||||| | ||||||    
T  48475 ctcttttggtcatctccgttaattttttaaaatatattattcttgatataattttaaccacttgattgcaggtctat 48399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 22227 - 22286
Alignment:
Q  271 ttttggtcctctccgttaattttttaatatctaatattt-tgatatgattttaaccattg 329  Q
    |||||||| ||||||||||||||||||| ||||| |||| |||||||||||  |||||||    
T  22227 ttttggtcatctccgttaattttttaatgtctaacatttctgatatgatttccaccattg 22286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 5212 - 5286
Alignment:
Q  214 ggtcccttaactaaaaaacgtctcaaattggtctcttatgtcttcttctgttacctcttttggtcctctccgtta 288  Q
    |||||| |||||| |||  ||||||| ||||||| | ||||||| | | |||||||||||||||||| |||||||    
T  5212 ggtcccctaactataaagtgtctcaatttggtctataatgtcttttgccgttacctcttttggtcctatccgtta 5286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 6577 - 6502
Alignment:
Q  274 tggtcctctccgttaattttttaatatctaa--tattttgatatgattttaaccattggattggatgtctattgta 347  Q
    ||||||||||||||| ||||||||| |||||  | |||| || |||||||||||||| ||||  ||||| ||||||    
T  6577 tggtcctctccgttagttttttaatgtctaaattttttttatgtgattttaaccatttgattctatgtccattgta 6502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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