View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21357_low_7 (Length: 398)
Name: NF21357_low_7
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 13715300 - 13715660
Alignment:
| Q |
15 |
agatgaacttcataaataagcttgtgaaaaaggctttgcatggaattgttctcattggaaaagcgttgtttgttttgttcaacccaaataatccaaatag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13715300 |
agatgaacttcataaataagcttgtgaaaaaggctttgcatggaattgttctcattggaaaagcgttgtctgttttgttcaacccaaataat-------- |
13715391 |
T |
|
| Q |
115 |
tatgaagcttggcagaaagcatgatttgtttcactggagggctccaaacattctacgagcaatgcagcggaatatcccaagatgataggtcgagaggttg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13715392 |
-atgaagcttggcagaaagcatgatttgtttcactggagggctccaaacattctacgagcaatgtagcggaatatcccaagatgataggtcgagaggttg |
13715490 |
T |
|
| Q |
215 |
atttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatgtgctcagctgtcatatagcagaagcaacaagcagagacc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13715491 |
atttatattgttgctgagccaattccaaaattgtgaggtgacagagcaattaaaaataatgtgctcagctgtcatatagcagaagcaacaaacagagacc |
13715590 |
T |
|
| Q |
315 |
aaaatacaccctcttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
13715591 |
aaaatacaccctcttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatg |
13715660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University