View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21357_low_8 (Length: 390)

Name: NF21357_low_8
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21357_low_8
NF21357_low_8
[»] chr3 (18 HSPs)
chr3 (1-382)||(679297-679678)
chr3 (193-382)||(751101-751290)
chr3 (1-195)||(747402-747596)
chr3 (3-186)||(2501761-2501944)
chr3 (12-176)||(2659420-2659584)
chr3 (72-188)||(7324687-7324803)
chr3 (70-188)||(2491753-2491871)
chr3 (70-191)||(9594898-9595019)
chr3 (70-188)||(9566094-9566212)
chr3 (67-176)||(2644633-2644742)
chr3 (70-179)||(7443269-7443378)
chr3 (70-188)||(2474776-2474895)
chr3 (81-188)||(9562235-9562342)
chr3 (70-180)||(754888-754998)
chr3 (195-355)||(2632504-2632659)
chr3 (70-168)||(7334560-7334658)
chr3 (70-195)||(2631013-2631138)
chr3 (70-188)||(2476308-2476426)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 679678 - 679297
Alignment:
Q  1 tgttgtggactccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataa 100  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679678 tgttgtggaatccttccgttagaaagtataagttactccctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataa 679579  T
Q  101 agataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679578 agataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatttcaat 679479  T
Q  201 tctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatactt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  679478 tctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatcatatactt 679379  T
Q  301 cacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  679378 cacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatgtagttatatgcctcattttca 679297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 193 - 382
Target Start/End: Complemental strand, 751290 - 751101
Alignment:
Q  193 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  751290 atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc 751191  T
Q  293 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttca 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  751190 atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttca 751101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 747596 - 747402
Alignment:
Q  1 tgttgtggactccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747596 tgttgtggaatccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataa 747497  T
Q  101 agataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcccacattatt 195  Q
      ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  747496 ttataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggctgattattggaaaagaatagagggcatcccacattatt 747402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 186
Target Start/End: Original strand, 2501761 - 2501944
Alignment:
Q  3 ttgtggactccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaag 102  Q
    |||||||  |||||||||| ||||| || |||| | ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||      
T  2501761 ttgtggaacccttccattacaaagtttaagttattgcctcctttggagaatcacgaatggacatcactaagctttggatatgatcatttcattgataatt 2501860  T
Q  103 ataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagggcatcc 186  Q
    |||||||  |||||||||||   ||||| || ||| | |||||||||||||||  ||||||||||| ||  ||||||| |||||    
T  2501861 ataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggactgattattggagaaagatagaggacatcc 2501944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 2659584 - 2659420
Alignment:
Q  12 ccttccattagaaagtatacgttacttcctcctttggagaatcacatatggacatcactaagctttggatatgatcatttcattgataaagataaggttg 111  Q
    |||||||||||||||| || |||| | |||||||||  |||||||| |||| ||| |||||||||||||||||||||||| ||||||||  |||||||||    
T  2659584 ccttccattagaaagtttaagttattgcctcctttgcggaatcacaaatggtcattactaagctttggatatgatcattttattgataattataaggttg 2659485  T
Q  112 ttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaata 176  Q
    |||    |||||   |||||| | || |||||||||||||||||  ||||||||||| |||||||    
T  2659484 ttgcccattctttcaaaaaagtgattagtgttaatactttggggactgattattggagaagaata 2659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
Q  72 agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa 171  Q
    |||||||| || |||||||| ||||||||  |||||||  |||||||||||||  ||||  | ||| |||||||||||||||||  ||||||||||||||    
T  7324803 agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa 7324704  T
Q  172 gaatagagggcatccca 188  Q
    ||||||||| |||||||    
T  7324703 gaatagaggacatccca 7324687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 2491753 - 2491871
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    |||||||||| |||||||||||||||||| |  |||||||  ||| ||||||||| ||||| || ||| ||||| |||||||||||  ||||||||||||    
T  2491753 taagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggac 2491852  T
Q  170 aagaatagagggcatccca 188  Q
    ||||||  ||| |||||||    
T  2491853 aagaatcaaggacatccca 2491871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 9595019 - 9594898
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    ||||||| || ||||||||||||||||||||  |||||||  ||| | || ||||  |||| || |||| |||| |||||||||||  ||||||||||||    
T  9595019 taagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggac 9594920  T
Q  170 aagaatagagggcatcccacat 191  Q
    ||||||||||| ||||||||||    
T  9594919 aagaatagaggacatcccacat 9594898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 9566212 - 9566094
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    |||| ||||| ||||||||||||||||||||  ||||| |  ||  ||||||| || |||| || ||| ||||| |||||||||||  ||||||||||||    
T  9566212 taagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggac 9566113  T
Q  170 aagaatagagggcatccca 188  Q
    ||||||||||| |||||||    
T  9566112 aagaatagaggacatccca 9566094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 2644742 - 2644633
Alignment:
Q  67 cactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattg 166  Q
    |||||||||||||||||||||| ||| |||||||  |||||||  || ||||||||   ||||| || ||| | |||||||||||||||  |||||||||    
T  2644742 cactaagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattg 2644643  T
Q  167 gacaagaata 176  Q
    ||||||||||    
T  2644642 gacaagaata 2644633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 7443378 - 7443269
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    |||| ||||| ||||||||||||||||||||  |||| ||||||| | |||||||  || | ||||||| ||||||| ||||||||  |||||||||||     
T  7443378 taagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggag 7443279  T
Q  170 aagaatagag 179  Q
    ||||||||||    
T  7443278 aagaatagag 7443269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 2474776 - 2474895
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattgga 168  Q
    |||||||||||||||||||||||||||||||  | ||||   ||||  |||||||  |||| || ||| |||||||||||||   ||| |||||||||||    
T  2474776 taagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattgga 2474875  T
Q  169 caagaatagagggcatccca 188  Q
    |||||||||||| |||||||    
T  2474876 caagaatagaggacatccca 2474895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
Q  81 tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg 180  Q
    ||||||||||||||||||||  |||||||  ||||||||||| |  |||| || ||| ||||| |||||||||||  |||||||||||  ||||||||||    
T  9562342 tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg 9562243  T
Q  181 gcatccca 188  Q
     |||||||    
T  9562242 acatccca 9562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 754998 - 754888
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    |||||||||| ||||||||||||||| ||||  | |||||  ||  ||||||| || |||| || ||||||||| |||| ||||||  ||||||||||||    
T  754998 taagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggac 754899  T
Q  170 aagaatagagg 180  Q
    |||||||||||    
T  754898 aagaatagagg 754888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 195 - 355
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
Q  195 ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta 290  Q
    |||||||||||||||||||||||| |||||||||| ||     |||||||||||||||||     |||||||| |||| | |||||  ||||||||||      
T  2632504 ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- 2632597  T
Q  291 tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt 355  Q
    ||||| ||||||||||||| | || |||||   | |||||||||| | |||||||||||||||||    
T  2632598 tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt 2632659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 7334658 - 7334560
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga 168  Q
    ||||||| |||||||||||||||||||||||  ||||||| |||| |||||||  | ||||| | ||| ||||| ||||||||||   |||||||||||    
T  7334658 taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga 7334560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 2631013 - 2631138
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    |||||||||| ||||||  ||||||||||||  |||||||  ||| |||||||||  |||| || |||| | || ||||||| |||  |||||||||||     
T  2631013 taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaa 2631112  T
Q  170 aagaatagagggcatcccacattatt 195  Q
    ||||||||| | ||||||| ||||||    
T  2631113 aagaatagacgacatcccatattatt 2631138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 2476308 - 2476426
Alignment:
Q  70 taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac 169  Q
    |||||||||| ||||||||||  ||||||||  | |||||  || ||||||||    |||| || ||| |||||||||||||||||  ||||||||||||    
T  2476308 taagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggac 2476407  T
Q  170 aagaatagagggcatccca 188  Q
    ||||||  ||| |||||||    
T  2476408 aagaatgcaggacatccca 2476426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University