View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21357_low_9 (Length: 377)
Name: NF21357_low_9
Description: NF21357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21357_low_9 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (2 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 41)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 89 - 360
Target Start/End: Original strand, 4613038 - 4613309
Alignment:
| Q |
89 |
tgcatagtacaatttacaattgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613038 |
tgcatagtacaatttacaattgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatg |
4613137 |
T |
|
| Q |
189 |
ttctctcctcgacgttccctaatatttgtgctattggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatct |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613138 |
ttctctcctcgacgttccctaatatttgtgctattggtcctttatcttcacttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatct |
4613237 |
T |
|
| Q |
289 |
ttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
4613238 |
ttggaaagaagataccaagtgtcttgattggcttgaatccaaggaaccgaagtccgttgtttatgtgaattt |
4613309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 108 - 360
Target Start/End: Complemental strand, 4557918 - 4557666
Alignment:
| Q |
108 |
ttgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccc |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4557918 |
ttgaagcagcaggaagggctcacaaagcgtctgcttttatttttaatacttctagtgaacttgagaaggatgtaatgaatgttctctcctcgacgttccc |
4557819 |
T |
|
| Q |
208 |
taatatttgtgctattggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaag |
307 |
Q |
| |
|
|||||||||| ||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4557818 |
aaatatttgtggtatcggccctttatcttcacttttaagtcaaagtccacataatcacttggcaagtttaagtaccaatctttggaaagaagataacaag |
4557719 |
T |
|
| Q |
308 |
tgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4557718 |
tgtcttggttggcttgaatccaaggaaccgaggtccgttgtttatgtgaattt |
4557666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 107 - 360
Target Start/End: Complemental strand, 4571766 - 4571513
Alignment:
| Q |
107 |
attgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||| |
|
|
| T |
4571766 |
attgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgagaaggatgtaatgaaagttatctcttcgacgttcc |
4571667 |
T |
|
| Q |
207 |
ctaatatttgtgctattggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaa |
306 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571666 |
ctaatgtttatgctattggccctttatcttcacttttaagtcaaagtccacagaatcacttggcaagtttaagtaccaatctttggaaagaagataacaa |
4571567 |
T |
|
| Q |
307 |
gtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
4571566 |
gtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattt |
4571513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 360
Target Start/End: Complemental strand, 4586430 - 4586177
Alignment:
| Q |
107 |
attgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttcc |
206 |
Q |
| |
|
||||||| ||||||| |||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| | | ||||| |
|
|
| T |
4586430 |
attgaaggcgcaggaacggctcacaaagactctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatgttctctccactaagttcc |
4586331 |
T |
|
| Q |
207 |
ctaatatttgtgctattggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaa |
306 |
Q |
| |
|
|| ||||| ||| ||||| |||||||| || |||||| ||||||||||||||| ||||| ||| ||||||||| |||||||||||||| |||| ||| |
|
|
| T |
4586330 |
cttctatttatgccattggccctttatcatcatttttaaatcaaagtccacaaaaccacttagcatctttaagtacaaatctttggaaagaggataccaa |
4586231 |
T |
|
| Q |
307 |
gtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
4586230 |
gtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattt |
4586177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 119 - 360
Target Start/End: Complemental strand, 4580214 - 4579973
Alignment:
| Q |
119 |
ggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtg |
218 |
Q |
| |
|
|||||||||||| || ||||||||| |||||| || ||||||||||||||||| |||||||||||||||| ||||||| | ||||||| |||| || |
|
|
| T |
4580214 |
ggaagggctcaccgaccctctgcttatattttaaacacttctaatgaacttgagaaggatgtaatgaatgctctctccactgtgttcccttgtattcatg |
4580115 |
T |
|
| Q |
219 |
ctattggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttg |
318 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||| |||| || ||| || |||||| |||||| ||||||||||||||| |||||||||| ||| |
|
|
| T |
4580114 |
ctattggccctttatcttcgtttttaaatcaaagtccagaaaaccatttgacatctttaagcaccaatttttggaaagaagataccaagtgtctttattg |
4580015 |
T |
|
| Q |
319 |
gcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
4580014 |
gcttgaatccaaggaacctaggtctgttgtttatgtgaattt |
4579973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 360
Target Start/End: Complemental strand, 4598938 - 4598712
Alignment:
| Q |
134 |
gcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggtcctttat |
233 |
Q |
| |
|
||||||||| | ||| |||| |||| |||||||||||| || |||||| |||||||||||||| | ||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
4598938 |
gcctctgctataattcttaacacttgtaatgaacttgagaatgatgtattgaatgttctctccagtatgttcccttgtatttatgccattggccctttat |
4598839 |
T |
|
| Q |
234 |
cttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaagga |
333 |
Q |
| |
|
|||| |||||| |||||||| |||||| || |||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
4598838 |
cttcgtttttaaatcaaagtcaacaaaagcatttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatccaatga |
4598739 |
T |
|
| Q |
334 |
atcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
| | ||||| ||||||||||||||||| |
|
|
| T |
4598738 |
accaaggtctgttgtttatgtgaattt |
4598712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4613008 - 4612916
Alignment:
| Q |
1 |
cgggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613008 |
cgggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcat |
4612916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 4557972 - 4558055
Alignment:
| Q |
6 |
agatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatct |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4557972 |
agatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatct |
4558055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 4586485 - 4586571
Alignment:
| Q |
8 |
atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4586485 |
atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcata |
4586571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 127 - 360
Target Start/End: Original strand, 4299179 - 4299412
Alignment:
| Q |
127 |
tcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggt |
226 |
Q |
| |
|
||||| ||| |||||| || |||||||||||| | |||||||||| | ||||||||||||| ||||| || | ||||||| | | | | ||||||| |
|
|
| T |
4299179 |
tcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattgga |
4299278 |
T |
|
| Q |
227 |
cctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaat |
326 |
Q |
| |
|
|||||| |||| | |||| ||||| |||||| |||||||||| | |||| || ||||||||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
4299279 |
cctttaccttcattattaaatcaaactccacataatcacttggaatctttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaat |
4299378 |
T |
|
| Q |
327 |
ccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
||||||| || | || ||||||||||||||||| |
|
|
| T |
4299379 |
ccaaggagccgggatcggttgtttatgtgaattt |
4299412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 4571821 - 4571907
Alignment:
| Q |
8 |
atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
|||| ||||||||||||||| || |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4571821 |
atccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcata |
4571907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 360
Target Start/End: Original strand, 4266631 - 4266757
Alignment:
| Q |
234 |
cttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaagga |
333 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || ||||||| ||||||||||| || || |
|
|
| T |
4266631 |
cttcttttttaaatcaaagtccacaaaatcacttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaaga |
4266730 |
T |
|
| Q |
334 |
atcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
| | || || ||||||||||| ||||| |
|
|
| T |
4266731 |
accaagatctgttgtttatgtaaattt |
4266757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 4622799 - 4622707
Alignment:
| Q |
242 |
ttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaa |
334 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| | || || ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
4622799 |
ttaaatcaaactccacataatcacttggcatctctaggttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaatccaaggaa |
4622707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 360
Target Start/End: Original strand, 4256076 - 4256215
Alignment:
| Q |
221 |
attggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggc |
320 |
Q |
| |
|
||||| |||||| |||| | |||| ||||| |||||| | |||||||||| ||| || ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4256076 |
attggacctttaccttcattattaaatcaaactccacatagtcacttggcatcgttaggttccaatctttggaaagaagataccaagtgtcttgaatggc |
4256175 |
T |
|
| Q |
321 |
ttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||||||||||||| | ||| |||||||| |||||||| |
|
|
| T |
4256176 |
ttgaatccaaggaacctgagtctgttgtttacgtgaattt |
4256215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 4514409 - 4514318
Alignment:
| Q |
3 |
ggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
||||| |||||||||| |||||| |||| ||| |||| ||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4514409 |
ggaaggtccttcagtctaaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcata |
4514318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 360
Target Start/End: Original strand, 4259532 - 4259745
Alignment:
| Q |
147 |
tttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggtcctttatcttctcttttaag |
246 |
Q |
| |
|
||||||| |||| | |||||||||| | |||||||||||||| |||| || | ||||||| | | | ||||||||| |||||| |||| | |||| |
|
|
| T |
4259532 |
tttttaacacttatgatgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggacctttaccttcattattaaa |
4259631 |
T |
|
| Q |
247 |
tcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgtt |
346 |
Q |
| |
|
||||| |||||| |||||| ||||| ||| || ||||||||||||||||||||| ||| ||||||| |||||||||| |||||| | ||| ||| |
|
|
| T |
4259632 |
tcaaactccacataatcacctggcatcgttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaatttaaggaacctgagtctgtt |
4259731 |
T |
|
| Q |
347 |
gtttatgtgaattt |
360 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
4259732 |
gtttacgtgaattt |
4259745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 4299106 - 4299021
Alignment:
| Q |
6 |
agatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgc |
91 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| | ||| | || |||||||||||||||| ||||||||||||||| |
|
|
| T |
4299106 |
agatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaatatccgtttgtcaaataactctcatctgc |
4299021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 4514599 - 4514712
Alignment:
| Q |
247 |
tcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgtt |
346 |
Q |
| |
|
||||||||||||||||||||||| | |||| || ||||||||||||||||||||| || ||||||| ||||||||||| || ||||| | || ||| |
|
|
| T |
4514599 |
tcaaagtccacaaaatcacttggaatctttaggttccaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaatcaggatctgtt |
4514698 |
T |
|
| Q |
347 |
gtttatgtgaattt |
360 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
4514699 |
gtttatgttaattt |
4514712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 4599014 - 4599101
Alignment:
| Q |
3 |
ggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctg |
90 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||| ||||||| || |||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4599014 |
ggaagatctttcagtcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgtcagacgactatcatctg |
4599101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 360
Target Start/End: Complemental strand, 4458262 - 4458136
Alignment:
| Q |
234 |
cttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaagga |
333 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||| || ||||||| ||||||||||| || || |
|
|
| T |
4458262 |
cttcttttataaatcaaagtccacaaaatcacttggcatctttaaattccaatctttggaaagaatatactaaatgtcttgagtggcttgaatcaaaaga |
4458163 |
T |
|
| Q |
334 |
atcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
| | | ||| ||| ||||||| ||||| |
|
|
| T |
4458162 |
accaaagtctgttatttatgtaaattt |
4458136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 327
Target Start/End: Complemental strand, 4461791 - 4461697
Alignment:
| Q |
233 |
tcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatc |
327 |
Q |
| |
|
|||||| || ||| ||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
4461791 |
tcttcttttataaatcaaagtccacaaaatcacctggcatctttaaattccaatctttggaaagaagatactaaatgtcttgaatggcttgaatc |
4461697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 4564330 - 4564252
Alignment:
| Q |
282 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
4564330 |
ccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaaggagccgggatccgttgtttatgtgaattt |
4564252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 3172402 - 3172282
Alignment:
| Q |
240 |
ttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgag |
339 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | | ||||||||||||||||||| || ||||||| ||||||||| | || ||||| | |
|
|
| T |
3172402 |
ttttaagtcaaagtccgcaaaatcacttggcatctttagattctaatctttggaaagaagatactaaatgtcttgaatggcttgaaacaaaagaatcaaa |
3172303 |
T |
|
| Q |
340 |
gtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
3172302 |
atctgttgtttatgtaaattt |
3172282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 327
Target Start/End: Complemental strand, 4470573 - 4470377
Alignment:
| Q |
131 |
agagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggtcctt |
230 |
Q |
| |
|
||||| |||||| || |||| |||||||||||||||||||||| ||||| ||||||| |||| || | |||||| | | | || |||||||| |
|
|
| T |
4470573 |
agagcttctgctattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattcccttctctatacgccattggtccac |
4470474 |
T |
|
| Q |
231 |
tatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatc |
327 |
Q |
| |
|
| |||||| |||||| |||||||||||||||||| | ||| ||||| | |||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
4470473 |
tttcttcttttttaaatcaaagtccacaaaatcatctagcatctttaaatttcaatctttggaaagaagatactaaatgtcttgagtggcttgaatc |
4470377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 4506701 - 4506792
Alignment:
| Q |
3 |
ggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
|||||||| ||||||| |||||| ||| ||| |||| ||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4506701 |
ggaagatctttcagtctaaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcata |
4506792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 4617641 - 4617563
Alignment:
| Q |
282 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||||||||||||||| || | || ||||||||||||||||| |
|
|
| T |
4617641 |
ccaacctttggaaagaagatacagagtgtcttgattggcttgaatccaaggagccgggatcagttgtttatgtgaattt |
4617563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 357
Target Start/End: Complemental strand, 4626617 - 4626495
Alignment:
| Q |
235 |
ttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaa |
334 |
Q |
| |
|
||||||||| | || |||||||||||| || ||| | |||| || ||||||||||||||||||| | ||| ||||||| |||||||||| ||||||| |
|
|
| T |
4626617 |
ttctcttttgaatcgaagtccacaaaaccagttgatatctttaggttccaatctttggaaagaagacaccaattgtcttgaatggcttgaattcaaggaa |
4626518 |
T |
|
| Q |
335 |
tcgaggtccgttgtttatgtgaa |
357 |
Q |
| |
|
| | ||| |||||||||||||| |
|
|
| T |
4626517 |
ccaaagtctgttgtttatgtgaa |
4626495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 4517199 - 4517256
Alignment:
| Q |
37 |
gaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
4517199 |
gaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcata |
4517256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 4593084 - 4593169
Alignment:
| Q |
9 |
tccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
||||||| |||||||| | ||| ||| |||| || || |||||||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4593084 |
tccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttccaaatatccatttgttagataactctcatctgcata |
4593169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 4517075 - 4516888
Alignment:
| Q |
147 |
tttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggtcctttatcttctcttttaag |
246 |
Q |
| |
|
|||| ||||||||| |||||||||| || |||||||| |||| ||| || | | ||||| ||||| ||| ||||| |||||| |||| |||| | |
|
|
| T |
4517075 |
ttttcaatacttctgatgaacttgagaatgatgtaataaatgctctatctattaagatcccttctatttatgccattggccctttaacttcatttttgaa |
4516976 |
T |
|
| Q |
247 |
tcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaa |
334 |
Q |
| |
|
||||||||| |||||| ||||||| | || || | ||||||||||||||||||| || ||||||| ||||||||||| |||||| |
|
|
| T |
4516975 |
tcaaagtccgcaaaataacttggcttctataggttctaatctttggaaagaagatatgaaatgtcttgaatggcttgaatctaaggaa |
4516888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 4602417 - 4602330
Alignment:
| Q |
273 |
gtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
||||| || |||| || ||||||||||||| ||||||||| ||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
4602417 |
gtttaggttccaacctctggaaagaagatactgagtgtcttgaatggcttgaatccaaggagccgggatccgttgtttatgtgaattt |
4602330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 4626796 - 4626883
Alignment:
| Q |
4 |
gaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgc |
91 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||| || | ||| || || |||||||| ||||||| |||| |||||||||| |
|
|
| T |
4626796 |
gaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgc |
4626883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 4580914 - 4580972
Alignment:
| Q |
32 |
tccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctg |
90 |
Q |
| |
|
|||| ||||||| || |||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4580914 |
tcctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctg |
4580972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 4592842 - 4592772
Alignment:
| Q |
290 |
tggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
4592842 |
tggaaagaagatactgagtgtcttaaatggcttgaatcgaaggaatcgggttccgttgtttatgtgaattt |
4592772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 4266454 - 4266360
Alignment:
| Q |
3 |
ggaagatccttcagtcgaaagttctgcaatccttgaatacagtcc---actttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
||||| ||||||| | |||||| ||||| |||||||| ||||| |||||| |||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4266454 |
ggaaggtccttcaacctaaagttttgcaaaccttgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcata |
4266360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 3172585 - 3172676
Alignment:
| Q |
3 |
ggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
||||||| ||||| || |||||| | ||| ||| |||| ||||| ||| |||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
3172585 |
ggaagatgcttcaatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcata |
3172676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 4461897 - 4461851
Alignment:
| Q |
127 |
tcacagagcctctgcttttatttttaatacttctaatgaacttgaaa |
173 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
4461897 |
tcacagagcttctgctgttattttgaatacttctaatgaactcgaaa |
4461851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 4617914 - 4617960
Alignment:
| Q |
48 |
actttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
|||||||| |||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
4617914 |
actttagtttccaaacatccatttgttagataactctcatctgcata |
4617960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 4506539 - 4506398
Alignment:
| Q |
219 |
ctattggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttg |
318 |
Q |
| |
|
||||||| |||||| |||| || ||| |||||||||||||||||| || |||| |||| | | |||||||||||||| |||| || ||||| | || |
|
|
| T |
4506539 |
ctattggccctttaacttcatttgtaaatcaaagtccacaaaatcagtttgcaactttagattcaaatctttggaaagaggatactaaatgtctcgaatg |
4506440 |
T |
|
| Q |
319 |
gcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
||| ||||| || ||| || || ||||||||||||||||| |
|
|
| T |
4506439 |
gctggaatcaaaagaaccggcttctgttgtttatgtgaattt |
4506398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 4568724 - 4568643
Alignment:
| Q |
221 |
attggtcctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagata |
302 |
Q |
| |
|
||||| ||||||||||| |||| | ||||| ||| ||||| |||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
4568724 |
attggccctttatcttcgtttttgaatcaaaatccccaaaagcacttggcttctttaggttccaatctttggaaagaagata |
4568643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 4622906 - 4622870
Alignment:
| Q |
135 |
cctctgcttttatttttaatacttctaatgaacttga |
171 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
4622906 |
cctctgctattatttttaatacttataatgaacttga |
4622870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 360
Target Start/End: Original strand, 16685729 - 16685858
Alignment:
| Q |
231 |
tatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaa |
330 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16685729 |
tatcttcacttttaagtcaaagtccacataatcagttgtcaagtttaagtatcaatctttggaaataagataccaagtgtcttgattggcttgaatccaa |
16685828 |
T |
|
| Q |
331 |
ggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |
|
|
| T |
16685829 |
ggaaccgagttccgttgtttatgtgaattt |
16685858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 16685616 - 16685708
Alignment:
| Q |
99 |
aatttacaattgaagcagcaggaagggctcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttc |
191 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16685616 |
aatttataattgaagcagcaggaagggctcatagagccactgcttttatttttaatacttctaatgaacttgagaaggatgtaatgaatgttc |
16685708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 16685571 - 16685483
Alignment:
| Q |
6 |
agatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcata |
94 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685571 |
agatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcata |
16685483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 1674845 - 1674767
Alignment:
| Q |
282 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||||||||||| ||| || | || ||||||||||||||||| |
|
|
| T |
1674845 |
ccaacctttggaaagaagatactgagtgtcttgaatggcttgaatccaacgaaccgggatcggttgtttatgtgaattt |
1674767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 20863086 - 20863044
Alignment:
| Q |
48 |
actttagtatccaaatatccgtttgtcagataactctcatctg |
90 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
20863086 |
actttagtctccaaatatccatttgttagataactctcatctg |
20863044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 127 - 360
Target Start/End: Complemental strand, 24103773 - 24103540
Alignment:
| Q |
127 |
tcacagagcctctgcttttatttttaatacttctaatgaacttgaaaaggatgtaatgaatgttctctcctcgacgttccctaatatttgtgctattggt |
226 |
Q |
| |
|
||||||||||||| || || || | |||||||| |||||||||| | ||||| ||||||| ||||| ||| | ||||||| ||| | | ||||| |
|
|
| T |
24103773 |
tcacagagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggc |
24103674 |
T |
|
| Q |
227 |
cctttatcttctcttttaagtcaaagtccacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaat |
326 |
Q |
| |
|
|| || ||||| |||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
24103673 |
ccatttgcttcttttttaaatcaaagtccacaaaatcacttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaat |
24103574 |
T |
|
| Q |
327 |
ccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
| || ||| | || || ||||||||||| ||||| |
|
|
| T |
24103573 |
caaaagaaccaagatcagttgtttatgtaaattt |
24103540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 24103903 - 24103945
Alignment:
| Q |
60 |
aaatatccgtttgtcagataactctcatctgcatagtacaatt |
102 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
24103903 |
aaatatccatttgttagataactctcatctgcatattacaatt |
24103945 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 360
Target Start/End: Original strand, 3191 - 3310
Alignment:
| Q |
242 |
ttaagtcaaagtccacaaaatcacttggcaagtttaag-taccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgagg |
340 |
Q |
| |
|
|||||||||| |||||| |||||||||| | ||| || | ||||||||||||||||||||| ||||||||||| ||||| |||||||||||| | | |
|
|
| T |
3191 |
ttaagtcaaactccacataatcacttggaatcttttaggttccaatctttggaaagaagataccaagtgtcttgaatggctcgaatccaaggaacctgag |
3290 |
T |
|
| Q |
341 |
tccgttgtttatgtgaattt |
360 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
3291 |
tctgttgtttatgtgaattt |
3310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 4199 - 4277
Alignment:
| Q |
282 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| |||||||||| | ||| ||||||||||||||||| |
|
|
| T |
4199 |
ccaatctttggaaagaagataccaagtgtcttgagtggcttgcatccaaggaacctgagtcggttgtttatgtgaattt |
4277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 3976 - 3895
Alignment:
| Q |
4 |
gaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctc |
85 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||| ||| ||| || | || |||||||| ||||||| ||||||||| |
|
|
| T |
3976 |
gaaggtccttcagccgaaagttctgcaatcctggaataccgtctactctattgtctaaatatccatttgtcaaataactctc |
3895 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 3087066 - 3086989
Alignment:
| Q |
255 |
cacaaaatcacttggcaagtttaagtaccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaagg |
332 |
Q |
| |
|
|||| |||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
3087066 |
cacataatcacttggcatctttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaatcaaagg |
3086989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 3087267 - 3087307
Alignment:
| Q |
6 |
agatccttcagtcgaaagttctgcaatccttgaatacagtc |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3087267 |
agatccttcagtcgaaagttctgcaatcctggaatacagtc |
3087307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 1281733 - 1281655
Alignment:
| Q |
282 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||| |||||||||||||||| | |||||||| ||||||||||| |||||| |||| || ||||||||||||||||| |
|
|
| T |
1281733 |
ccaacctttggaaagaagatatcgagtgtcttcaatggcttgaatcgaaggaaccgagatctgttgtttatgtgaattt |
1281655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 1282006 - 1282050
Alignment:
| Q |
48 |
actttagtatccaaatatccgtttgtcagataactctcatctgca |
92 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
1282006 |
acttttgtttccaaatatccatttgttagataactctcatctgca |
1282050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 82 - 4
Alignment:
| Q |
282 |
ccaatctttggaaagaagataacaagtgtcttggttggcttgaatccaaggaatcgaggtccgttgtttatgtgaattt |
360 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| |||||||||||||| ||| || | || ||||||||||||||||| |
|
|
| T |
82 |
ccaacctttggaaagaagatactgagtgtcttgaatggcttgaatccaacgaaccgggatcggttgtttatgtgaattt |
4 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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