View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21358_high_6 (Length: 340)
Name: NF21358_high_6
Description: NF21358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21358_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 200 - 325
Target Start/End: Complemental strand, 31504264 - 31504139
Alignment:
| Q |
200 |
gtggcgcgtgcaggttgtagagagtgacagagaagtgagtaggataagatgaatgaaagagacaaaaagtacataaacttcgctcatctagtcatctatg |
299 |
Q |
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| T |
31504264 |
gtggcgcgtgcaggttgtagagagtgacagagaagtgagtaggataagatgaatgaaagagacaaaaagtacataaacttcgctcatctggtcatctatg |
31504165 |
T |
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| Q |
300 |
tattattggtcaacacacaaaatatt |
325 |
Q |
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| T |
31504164 |
tattattggtcaacacacaaaatatt |
31504139 |
T |
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Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 31504446 - 31504325
Alignment:
| Q |
19 |
gaatcccaaaaactagttctttaaggtaacaaggtacaataatgtaatccaaaacaaaccctgcaaaaacctctggtgctactcacgacagcactgagca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31504446 |
gaatcccaaaaactagttctttaaggtaacaaggtacaataatgtaatccaaaacaaaccctgcaaaaacctctggtgctactcacgacagcactgagca |
31504347 |
T |
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| Q |
119 |
tgaaagcaacttatgatactgc |
140 |
Q |
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| T |
31504346 |
tgaaagcaacttatgatactgc |
31504325 |
T |
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