View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21358_low_1 (Length: 623)
Name: NF21358_low_1
Description: NF21358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21358_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 17 - 535
Target Start/End: Complemental strand, 1209525 - 1209001
Alignment:
| Q |
17 |
caagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttgagtttattttatgtgttaacctttgatttttagaaaaggagatttcgataatc |
116 |
Q |
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| T |
1209525 |
caagatgctcccaaaaaatatcaaaggaagcggttaaacctaatttgagtttattttatgtgttaacctttgatttttaagaaaggagattttgataatc |
1209426 |
T |
|
| Q |
117 |
cgaagtttcatcaagggagataagtaaattatagttaagaattgttccaccaaaaacctaatttgaatcttattacttttgtgagcatttacttgccaag |
216 |
Q |
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|||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1209425 |
agaagtttcatca--gaagataagtaaattatagttaaaaattattccaccaaaaacctaatttgagtcttattacttttgtgagcatttacttgccaag |
1209328 |
T |
|
| Q |
217 |
aagtgtttagcaaagtccatcatgttcattttatttttgagagttctcannnnnnn-cctcttgagaggaagttcatgttctcatgagtcttatttctta |
315 |
Q |
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| T |
1209327 |
aagtgtttagcaaagtccatcatgttcattttatttttgagagttctcattttttttcctcttgagaggaagtccatgttctcatgagtcttatttctta |
1209228 |
T |
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| Q |
316 |
attagtatatttagcaagtgttacatagtagtatataaccaccgtcaat----ataagactaattatcgttgtctgcaatagaacattcgaattttttat |
411 |
Q |
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| T |
1209227 |
attagtatatttagcaagtgttacatagtagtatataaccactgtcaatcgttataagactaattatcgttgtctgcaatagaacattcgaattttttat |
1209128 |
T |
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| Q |
412 |
acataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcgatcaatctttaagctagtaaaaacactaatttagtgctt---taaaat |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1209127 |
acataaaatctagctgagtctcgtgttaacaatgtttttattctaagcatcgatcaatctttaagctagtaaaaacactaatttagtgctttaataaaat |
1209028 |
T |
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| Q |
509 |
gtttgttggtcatgttacattctagtt |
535 |
Q |
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| T |
1209027 |
gtttgttggtcatattacattctagtt |
1209001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 535 - 612
Target Start/End: Complemental strand, 1208933 - 1208856
Alignment:
| Q |
535 |
tagtttaaccaatcaaagaactcccttattgtgtgtaggtctaacctatgagttgttcattgctttgatccttttcat |
612 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1208933 |
tagttgaaccaatcaaagaactcctttattgtgtgtaggtctaacctatgatgtgttcattgctttgatccttttcat |
1208856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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