View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21358_low_11 (Length: 201)
Name: NF21358_low_11
Description: NF21358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21358_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 25524157 - 25524325
Alignment:
| Q |
12 |
gtgagaagaatcaggtttcaaattttgcaaactcctttcaaattttaaaacaactaaacttgcataaacaagctactaatacttaaaacgcaacatgcag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25524157 |
gtgagaagaatcaggtttcaaattttgcaaactcctttcaaattttaaaacaactaaacttgcataaacaagctactaatacttaaaacgcaacatgcag |
25524256 |
T |
|
| Q |
112 |
aaacttaaaacaatcgtaaacaaggccaaagaaaaaacaacatgggaacaatgcaaataactaaactgg |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25524257 |
aaacttaaaacaatcgtaaacaaggccaaagaaaaaacaacatgggaacaatgtaaataactaaactgg |
25524325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 25520133 - 25520178
Alignment:
| Q |
102 |
caacatgcagaaacttaaaacaatcgtaaacaaggccaaagaaaaa |
147 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||||| |||||||| |
|
|
| T |
25520133 |
caacatgcagaaaattaaaacaagcataaacaaggccgaagaaaaa |
25520178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 25525657 - 25525701
Alignment:
| Q |
103 |
aacatgcagaaacttaaaacaatcgtaaacaaggccaaagaaaaa |
147 |
Q |
| |
|
||||||||||||| |||||||| | | |||||||||||||||||| |
|
|
| T |
25525657 |
aacatgcagaaacataaaacaagcatgaacaaggccaaagaaaaa |
25525701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University