View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21358_low_2 (Length: 622)
Name: NF21358_low_2
Description: NF21358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21358_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 509
Target Start/End: Complemental strand, 37049312 - 37048797
Alignment:
| Q |
13 |
tcatcagaacacagctagaatattgacaaaagatatccttcagtccatgtttactgaaaaaggtaatgtaacgctttcctatcccattttcaaattgatt |
112 |
Q |
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| T |
37049312 |
tcataagaacacagctagaatattgacaaaagatatccttcagtccatgtttactgaaaaaggtaatgtaacgctttcctatcccattttcaaattgatt |
37049213 |
T |
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| Q |
113 |
aatacttcaatctaagtaa---------------aactttaaactgattgtgagtttggcggattcatgatgtgcaactgtgattttggtaaaagctata |
197 |
Q |
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| T |
37049212 |
aatacttcaatctaagtaaccaatcttcgtttaaaactttaaactgattgtgagtttggcggattcatgatgtgcaactgtgattttggtaaaagctata |
37049113 |
T |
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| Q |
198 |
ctttgaagcttnnnnnnnnn----tcacggtgtcacagttatttactcaaattcaccatgtttccaaacattcactaaaaaacttcaaatatggatgaca |
293 |
Q |
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| T |
37049112 |
ctttgaagcttaaaaaaaaaaaaatcacggtgtcacagttatttagtcaaattcaccatgtttccaaacatgcactaaagaacttgaaatatggatgaca |
37049013 |
T |
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| Q |
294 |
gaatcttacttcccattgttgtaggtctggttgtccttgcttgagttctagacctaaccaaatttagcatttgaaaaatcagactaacttagtgtgaaga |
393 |
Q |
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| T |
37049012 |
gaatcttacttcccattgttgtaggtctggttgtccttgcttgagttctagacctaaccaaatttagcatttgaaaaatcagactaacttagtgtgaaga |
37048913 |
T |
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| Q |
394 |
atgcagtcctattccttgacaccaataatcaaatcaagctccactcctagacagatcttcagagacatactgcaataaaaatcagaccatataagatatt |
493 |
Q |
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| T |
37048912 |
atgcagtcctattccttgacaccaataatcaaatcaagctccactcctagacagatcttcagagacatactgcaataaaaatcagaccatataagatatt |
37048813 |
T |
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| Q |
494 |
ttcttttctagaattg |
509 |
Q |
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| T |
37048812 |
ttcttttctagaattg |
37048797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 607
Target Start/End: Complemental strand, 37048729 - 37048697
Alignment:
| Q |
575 |
taattgactcttgtttaacataagaggaaaaag |
607 |
Q |
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| T |
37048729 |
taattgactcttgtttaacataagaggaaaaag |
37048697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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